genome.fa.s122.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold122
Parameters: 2 7 7 80 10 50 1000
Length:  766530

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 524 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722168--722252	19	4.7	19	79	18	101	37	18	11	31	1.87
722206--722230	13	1.9	13	100	0	50	32	20	16	32	1.94
722187--722250	32	2.0	33	96	3	121	34	20	12	32	1.90
722999--723285	52	5.6	53	80	10	230	33	17	25	22	1.96
723111--723285	92	1.9	92	85	3	233	34	17	23	24	1.96
723156--723287	43	2.9	43	82	6	129	34	17	23	24	1.96
723044--723285	52	4.9	49	78	11	244	34	16	24	23	1.95
725669--725747	20	3.7	21	75	15	72	26	13	15	44	1.84
725734--725772	13	3.0	13	96	0	69	30	17	15	35	1.91
728212--728284	20	3.6	20	81	3	101	35	13	19	31	1.91
728230--728305	21	3.7	21	80	3	100	42	11	17	28	1.84
728212--728305	41	2.3	41	98	0	179	39	12	18	29	1.88
728344--728369	13	2.0	13	100	0	52	38	15	15	30	1.88
734357--735040	28	24.0	28	86	4	816	28	30	17	23	1.97
734357--735040	57	12.0	56	84	5	775	28	30	17	23	1.97
735103--735234	49	2.8	48	78	7	137	21	28	17	31	1.96
738816--738843	13	2.2	13	100	0	56	28	14	17	39	1.89
738796--738862	33	2.0	33	88	5	100	29	16	13	40	1.87
739616--739767	73	2.1	73	100	0	304	21	17	23	38	1.93
745832--745864	17	1.9	17	93	0	57	84	15	0	0	0.61
747147--747624	32	15.3	31	84	9	507	23	30	14	31	1.94
747157--747625	62	7.5	61	84	7	552	23	30	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747147--747623	188	2.5	186	85	7	590	23	30	14	31	1.94
747627--747957	27	11.0	27	72	21	214	21	32	12	33	1.91
747598--747997	95	4.3	95	77	13	461	21	32	12	33	1.91
747629--748020	61	6.4	56	75	14	234	21	32	13	32	1.92
747971--748095	29	4.3	30	82	7	141	32	32	18	16	1.94
747971--748095	57	2.2	58	85	5	164	32	32	18	16	1.94
748112--748475	48	7.9	48	77	11	359	25	24	18	31	1.98
748219--748968	39	17.8	39	74	16	483	26	25	19	28	1.99
748167--749122	87	11.0	87	82	10	1129	26	25	19	28	1.98
748258--748500	135	1.8	135	93	1	425	26	25	18	30	1.98
748472--748530	30	2.0	30	96	0	109	28	30	20	20	1.97
748167--749122	252	3.7	254	81	11	1061	26	25	19	28	1.98
748931--749300	52	7.3	52	72	9	244	23	26	16	32	1.96
748932--749171	49	4.7	51	80	4	254	25	25	17	32	1.97
748932--749170	101	2.4	101	88	0	334	24	25	17	32	1.97
750143--750170	13	2.2	13	100	0	56	28	14	17	39	1.89
750123--750223	33	3.0	33	70	11	105	31	15	12	39	1.86
760182--760233	19	2.7	20	87	3	70	26	17	15	40	1.89
760163--760251	20	4.5	19	77	5	79	30	21	14	33	1.93
760281--760348	20	3.8	20	74	25	87	38	14	17	29	1.90
760303--760361	13	5.0	13	71	23	58	33	15	16	33	1.91
760283--760385	33	3.1	33	92	2	163	35	12	18	33	1.89

Tables:   1   2   3   4   5

The End!