genome.fa.s122.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold122
Parameters: 2 7 7 80 10 50 1000
Length:  766530

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 524 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563749--563813	33	2.0	33	90	6	105	33	13	18	33	1.90
564493--564531	20	1.9	21	94	5	71	30	10	15	43	1.80
564586--564611	13	2.0	13	100	0	52	30	15	15	38	1.88
565318--565361	21	2.1	21	83	8	54	25	31	4	38	1.76
567164--567202	13	3.0	13	96	0	69	41	15	12	30	1.85
571118--571162	21	2.1	21	84	8	56	22	20	4	53	1.63
573378--573403	13	2.0	13	100	0	52	30	15	15	38	1.88
574055--574112	29	2.0	29	100	0	116	17	13	20	48	1.81
574049--574106	29	2.2	24	73	26	62	15	13	17	53	1.73
576646--576673	13	2.2	13	100	0	56	28	14	17	39	1.89
580522--580589	32	2.1	32	83	10	84	41	8	8	41	1.67
586141--586279	74	1.9	74	83	7	185	39	8	5	46	1.56
586390--586443	2	28.5	2	85	10	78	51	0	1	46	1.11
586582--586630	18	2.8	18	84	3	64	46	2	2	48	1.25
594749--594796	22	2.0	25	84	15	66	45	0	6	47	1.27
594740--594801	22	2.8	20	78	21	63	41	0	8	50	1.32
594832--594933	16	6.3	16	83	1	105	47	2	6	43	1.45
595730--595785	16	3.4	17	78	7	62	50	17	7	25	1.72
596757--596793	5	7.2	5	87	6	56	78	2	18	0	0.87
597151--597192	14	3.0	14	82	10	50	76	0	2	21	0.90
597551--597707	80	2.0	81	88	3	237	36	10	18	33	1.86
601340--601450	54	2.1	54	87	0	159	32	15	25	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601359--601463	54	1.9	54	86	0	147	35	15	22	26	1.94
608133--608162	3	10.0	3	100	0	60	33	0	0	66	0.92
613261--613315	20	2.8	20	97	0	101	32	14	14	38	1.87
613336--613386	20	2.5	20	90	0	75	41	15	9	33	1.80
615585--616122	61	8.5	64	81	6	487	26	24	15	32	1.96
615572--616112	191	2.9	186	82	7	601	27	24	15	32	1.95
615552--616136	126	4.7	125	80	8	552	26	24	16	33	1.96
616025--616310	69	4.2	68	78	6	271	26	24	13	35	1.93
616025--616310	136	2.1	133	82	5	326	26	24	13	35	1.93
617979--618053	37	2.0	37	97	0	141	33	28	20	18	1.96
619661--619688	3	9.3	3	100	0	56	64	0	0	35	0.94
619905--619933	15	2.0	15	93	6	51	75	0	0	24	0.80
623214--623252	17	2.2	18	90	4	62	66	0	5	28	1.12
625494--625528	16	2.2	16	89	0	52	2	2	11	82	0.88
626579--626605	13	2.1	13	100	0	54	29	14	14	40	1.86
626560--626624	32	2.0	32	87	3	94	30	15	12	41	1.84
626589--626644	19	2.9	19	81	2	67	35	16	12	35	1.86
628939--628980	20	2.0	21	82	13	52	54	7	14	23	1.64
636218--636287	31	2.3	30	80	11	79	30	8	24	37	1.85
636960--637029	31	2.3	31	84	0	86	32	24	10	32	1.88
636960--637048	31	2.9	31	81	1	81	32	23	13	30	1.93
637911--637941	13	2.4	13	94	0	53	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637891--637957	33	2.0	33	88	11	102	32	17	13	35	1.89
638026--638053	13	2.2	13	100	0	56	42	14	14	28	1.84
638604--638657	19	2.7	20	85	11	74	24	38	1	35	1.66
640501--640529	13	2.2	13	100	0	58	41	17	13	27	1.87
646651--646714	33	1.9	33	87	12	96	31	15	14	39	1.87
646787--646813	13	2.1	13	100	0	54	40	14	14	29	1.86
648772--649037	146	1.8	146	83	6	351	55	10	0	33	1.37
648772--649037	72	3.6	72	81	7	286	55	10	0	33	1.37
648772--649058	73	3.9	71	77	11	201	55	10	0	33	1.36
649358--649405	14	3.5	13	81	10	60	56	0	2	41	1.11
649357--649405	13	3.6	14	76	13	57	57	0	2	40	1.10
651876--651946	24	2.9	24	77	16	74	60	1	1	36	1.14
651884--651968	16	4.9	16	73	18	64	60	1	1	37	1.12
651974--652047	22	3.3	22	79	5	69	55	0	0	44	0.99
651977--652015	20	2.0	20	89	0	60	48	0	0	51	1.00
651954--652022	35	2.0	35	83	13	90	46	0	1	52	1.09
652513--652569	29	2.0	28	86	3	78	42	0	0	57	0.98
652511--652575	16	4.2	16	75	18	57	40	0	0	60	0.97
657120--657144	13	1.9	13	100	0	50	32	16	20	32	1.94
659496--659784	51	5.6	51	89	0	380	31	26	10	31	1.90
659754--659966	79	2.7	79	88	0	302	26	27	15	30	1.95
659923--659996	28	2.6	28	84	0	94	22	32	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664436--664485	19	2.6	19	84	9	57	40	14	16	30	1.87
665038--665085	23	2.1	23	100	0	96	41	8	12	37	1.73
665124--665162	20	2.0	19	85	5	51	33	23	0	43	1.54
673307--673400	47	2.0	47	91	0	152	34	17	21	27	1.95
673454--673478	13	1.9	13	100	0	50	32	16	20	32	1.94
673434--673497	32	2.0	32	84	9	85	37	15	18	28	1.92
673852--673903	20	2.5	21	87	3	70	38	15	7	38	1.76
677045--677071	13	2.1	13	100	0	54	29	14	14	40	1.86
677136--677188	13	4.5	13	71	26	55	33	13	16	35	1.88
677120--677188	33	2.1	33	89	5	104	31	13	18	36	1.89
679403--679445	21	2.1	20	83	12	52	53	9	13	23	1.69
679403--679445	20	2.1	21	83	12	54	53	9	13	23	1.69
684570--684625	22	2.5	22	88	0	76	37	7	33	21	1.81
685150--685202	19	2.7	21	88	8	76	26	15	16	41	1.88
685247--685278	13	2.5	13	94	0	55	34	15	9	40	1.80
690378--690423	14	3.0	16	84	12	53	67	0	0	32	0.91
690522--690609	45	2.0	45	93	4	151	42	4	3	50	1.39
690552--690591	18	2.1	20	86	9	57	45	2	2	50	1.28
693948--693987	20	2.0	21	90	5	64	42	7	0	50	1.30
694118--694152	2	17.5	2	100	0	70	48	0	0	51	1.00
694564--694601	16	2.4	16	91	4	60	31	0	0	68	0.90
694867--694903	11	3.4	11	96	0	65	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695314--695368	20	2.8	19	83	8	67	32	21	9	36	1.85
695418--695443	13	2.0	13	100	0	52	30	15	15	38	1.88
695400--695464	33	2.0	33	87	6	96	38	12	15	33	1.85
697057--697087	9	3.4	9	90	0	53	45	0	32	22	1.53
697544--697605	20	3.2	20	82	11	83	33	12	17	35	1.88
697633--697696	33	1.9	33	87	6	94	29	10	20	39	1.87
706235--706261	13	2.1	13	100	0	54	29	14	14	40	1.86
710937--711065	52	2.5	52	97	0	240	28	17	17	36	1.93
711074--711098	13	1.9	13	100	0	50	36	16	16	32	1.90
711141--711238	19	5.8	18	69	28	81	36	17	12	33	1.87
711136--711236	32	3.1	32	94	1	166	35	17	11	34	1.87
711160--711184	13	1.9	13	100	0	50	32	16	16	36	1.90
711268--711315	21	2.3	22	75	10	55	35	14	16	33	1.89
712038--712188	52	2.9	55	88	8	224	33	19	25	21	1.96
712096--712828	92	8.0	92	88	4	1013	30	18	25	25	1.98
712142--712828	135	5.0	134	86	6	827	30	18	25	25	1.98
712039--712823	227	3.4	231	87	5	1133	31	18	25	24	1.98
712823--713010	32	5.8	33	87	3	276	17	17	36	29	1.92
713025--713658	131	4.9	129	82	9	674	32	12	35	19	1.90
713025--713662	34	19.8	34	78	12	589	32	12	35	19	1.90
713298--713493	27	6.6	27	73	17	149	27	14	37	20	1.91
713298--713658	61	5.8	61	87	6	460	29	13	37	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713127--713658	122	4.1	125	83	9	592	31	12	36	19	1.90
713444--713503	27	2.2	27	84	0	75	30	15	36	18	1.91
713289--713829	63	8.6	63	85	7	463	32	13	34	20	1.91
713025--713841	34	25.5	30	71	15	256	32	13	33	20	1.91
713670--713838	33	5.3	33	74	8	188	33	15	27	23	1.95
713592--713862	126	2.1	126	87	6	388	32	14	30	22	1.94
713603--713858	33	8.0	33	72	11	174	32	14	30	21	1.94
714805--714858	15	3.4	17	75	14	53	0	7	11	81	0.87
714796--714857	27	2.5	24	86	7	79	0	9	8	82	0.85
715105--715139	14	2.6	14	90	4	54	0	0	17	82	0.66

Tables:   1   2   3   4   5