genome.fa.s136.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1039917

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 665 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172757--172815	23	2.7	21	75	10	64	45	0	1	52	1.10
173244--173296	21	2.7	20	79	5	54	39	3	3	52	1.37
173574--173612	3	13.0	3	100	0	78	33	0	0	66	0.92
174312--174353	21	2.0	21	85	0	57	52	2	7	38	1.42
175001--175041	12	3.3	12	83	6	55	39	0	0	60	0.96
175001--175043	13	3.4	13	80	3	52	39	0	0	60	0.97
176322--176393	15	4.8	16	70	19	57	56	1	0	41	1.07
177863--177899	14	2.6	15	87	8	51	45	0	0	54	1.00
178497--178537	21	2.0	21	85	0	55	41	2	2	53	1.27
178872--178903	16	2.1	15	94	5	55	71	0	3	25	1.00
179430--179484	18	3.4	16	72	20	51	40	0	0	60	0.97
179459--179512	23	2.4	22	79	11	65	33	3	1	61	1.25
179595--179625	2	15.5	2	93	0	53	45	0	3	51	1.17
180029--180101	21	3.5	20	76	14	58	47	6	0	45	1.29
180639--180681	23	1.9	23	90	4	70	62	0	0	37	0.95
189126--189169	18	2.5	17	85	3	61	40	0	0	59	0.98
189116--189193	27	2.8	28	77	11	72	35	1	1	61	1.12
306242--306277	18	1.9	19	88	5	56	38	2	2	55	1.29
307796--307832	18	2.1	18	90	5	58	45	0	0	54	1.00
308374--308407	16	2.2	15	94	5	59	79	0	0	20	0.73
309691--309764	37	2.0	35	82	12	87	58	0	2	39	1.13
311035--311097	12	5.5	11	76	14	65	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311035--311098	11	5.6	12	78	12	64	39	0	0	60	0.97
311034--311098	23	2.8	24	79	9	73	40	0	0	60	0.97
311117--311173	14	4.1	14	84	8	64	47	0	0	52	1.00
311135--311180	18	2.8	16	81	12	56	54	0	0	45	0.99
317551--317575	5	5.0	5	100	0	50	0	20	0	80	0.72
318663--318702	14	2.9	14	84	0	53	50	0	2	47	1.14
318677--318725	21	2.3	22	82	3	55	55	0	0	44	0.99
324668--324713	16	2.9	17	84	9	53	56	0	0	43	0.99
324666--324720	20	2.6	21	82	8	67	52	0	1	45	1.11
324878--324958	27	2.9	26	71	18	65	54	2	0	43	1.13
324879--324963	29	2.9	29	69	11	75	52	2	0	44	1.13
324978--325021	20	2.2	20	92	8	72	61	0	0	38	0.96
334719--334743	2	12.5	2	100	0	50	52	0	0	48	1.00
334928--334975	24	2.0	24	84	4	62	29	6	0	64	1.18
336315--336352	3	12.7	3	100	0	76	31	0	0	68	0.90
337445--337472	14	2.0	14	100	0	56	28	7	21	42	1.79
337463--337513	10	5.0	10	80	4	66	41	7	9	41	1.67
337870--337932	17	3.5	19	68	14	53	58	4	3	33	1.35
337882--337928	17	2.7	18	74	12	62	63	2	0	34	1.06
338464--338511	19	2.4	22	76	20	59	47	0	0	52	1.00
338465--338506	17	2.3	17	88	12	57	50	0	0	50	1.00
341961--342033	7	10.7	7	78	21	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341962--342033	30	2.4	30	83	6	92	54	0	0	45	0.99
341965--342109	6	23.0	6	72	11	67	53	0	4	41	1.25
343819--343845	2	13.5	2	100	0	54	0	51	0	48	1.00
345509--345560	25	2.1	25	88	0	77	36	15	9	38	1.80
346313--346354	13	3.2	13	80	12	59	35	0	0	64	0.94
346311--346357	15	3.4	15	80	19	66	36	0	0	63	0.94
347463--347513	2	25.5	2	100	0	102	50	0	0	49	1.00
347701--347841	70	2.0	70	91	0	228	22	11	9	56	1.64
349152--349199	2	24.5	2	95	4	89	52	0	0	47	1.00
349719--349756	19	2.1	18	90	5	58	57	0	0	42	0.98
351692--351854	64	2.5	65	81	5	177	27	6	12	52	1.64
353115--353174	28	2.2	29	82	14	83	65	0	0	35	0.93
353137--353173	17	2.2	16	90	4	56	67	0	0	32	0.91
353495--353524	8	3.6	8	95	4	51	50	3	0	46	1.18
364825--364865	3	13.7	3	100	0	82	31	0	0	68	0.90
365076--365166	15	5.8	16	72	27	63	61	1	0	37	1.03
365722--365774	19	2.9	19	75	11	56	56	1	0	41	1.10
366451--366511	19	3.3	18	77	11	52	60	1	4	32	1.28
366480--366542	25	2.5	26	82	10	85	52	1	1	44	1.20
369210--369267	17	3.5	16	76	6	53	36	3	0	60	1.14
369335--369386	22	2.6	19	77	16	52	44	1	1	51	1.23
369716--369918	96	2.1	97	89	4	306	35	8	9	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370638--370706	24	3.0	24	68	14	56	42	1	0	56	1.08
376316--376347	2	16.0	2	100	0	64	50	0	0	50	1.00
376553--376587	6	5.8	6	100	0	70	34	0	65	0	0.93
385059--385103	2	23.0	2	81	4	56	55	0	44	0	0.99
385059--385131	10	7.3	10	74	20	64	54	2	41	1	1.23
385212--385240	2	14.5	2	100	0	58	51	0	48	0	1.00
385330--385397	25	2.6	26	77	11	68	57	1	0	41	1.08
386269--386307	9	4.3	9	84	9	53	25	0	0	74	0.82
386267--386299	3	11.3	3	87	6	50	27	0	0	72	0.85
386357--386394	12	3.2	12	92	0	58	55	0	2	42	1.14
388013--388038	2	13.0	2	100	0	52	50	0	0	50	1.00
389856--389905	12	4.3	12	77	10	50	50	0	2	48	1.12
389858--389900	22	1.9	23	90	4	70	51	0	0	48	1.00
391767--391807	2	20.5	2	100	0	82	51	0	0	48	1.00
392952--392991	2	20.0	2	100	0	80	50	0	0	50	1.00
393716--393777	16	3.9	16	71	23	58	56	0	0	43	0.99
393719--393768	11	4.5	11	80	14	59	56	0	0	44	0.99
393705--393790	36	2.4	38	77	18	103	54	0	0	45	0.99
393724--393786	21	3.3	20	73	24	64	53	0	0	46	1.00
393706--393768	32	2.0	32	87	12	94	55	0	0	44	0.99
393732--393790	20	3.2	20	72	18	63	55	0	0	44	0.99
397180--397219	18	2.0	20	86	13	57	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397221--397250	15	1.9	16	93	6	53	53	0	0	46	1.00
401214--401244	2	15.5	2	93	0	53	51	0	3	45	1.17
402825--402860	18	2.1	17	89	5	54	27	0	2	69	1.02
403742--403792	16	3.1	16	76	15	59	64	3	0	31	1.11
404141--404197	26	2.1	29	83	9	75	38	0	1	59	1.08
405204--405308	55	1.9	54	83	9	133	52	3	1	41	1.30
405457--405487	14	2.2	14	100	0	62	25	0	0	74	0.82
405851--405881	13	2.4	13	94	0	53	38	0	0	61	0.96
406466--406508	23	2.0	23	81	9	54	46	2	0	51	1.13
408526--408579	24	2.3	24	87	9	76	35	0	7	57	1.27
409487--409525	15	2.4	16	83	8	53	33	0	2	64	1.08
409479--409521	21	2.0	21	82	8	52	30	0	2	67	1.03
412541--412573	9	3.8	9	92	4	50	18	3	0	78	0.87
416925--416997	26	2.7	26	82	6	74	60	0	0	39	0.97
417281--417322	19	2.3	19	79	4	50	47	0	4	47	1.23
417851--417875	2	12.5	2	100	0	50	48	0	0	52	1.00
418121--418200	28	2.9	28	75	18	87	60	1	0	38	1.05
418168--418246	30	2.8	28	73	17	74	51	2	0	45	1.14
418168--418247	27	2.9	28	74	17	76	51	2	0	46	1.14
418234--418273	21	1.9	21	84	0	53	57	0	0	42	0.98
422644--422676	10	3.0	11	87	12	50	60	0	0	39	0.97
423726--423931	90	2.3	89	86	2	270	17	12	15	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430944--431006	26	2.4	25	75	12	65	42	3	1	52	1.27
432269--432306	2	19.0	2	100	0	76	0	50	0	50	1.00
434817--434867	25	2.0	25	96	0	93	33	11	9	45	1.74
435020--435045	2	13.0	2	100	0	52	0	50	0	50	1.00
437725--438084	128	2.9	127	91	6	561	25	15	20	38	1.92
439670--439705	2	18.0	2	100	0	72	50	50	0	0	1.00
441961--441993	2	16.5	2	100	0	66	0	48	0	51	1.00
445393--445434	22	1.9	22	90	0	66	52	0	4	42	1.22
445675--445712	18	2.1	18	85	9	51	34	0	0	65	0.93
445709--445827	59	2.0	58	80	13	129	42	1	1	53	1.20

Tables:   1   2   3   4   5   6