Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1039917

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 665 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
971150--971232
11
7.2
11
71
20
53
61
0
0
38
0.96
971144--971212
33
2.0
37
86
11
101
60
0
0
39
0.97
971155--971230
36
2.1
37
83
11
95
61
0
0
38
0.96
971177--971257
13
5.9
13
70
21
51
54
0
0
45
0.99
971179--971278
26
3.9
27
80
10
111
54
0
0
46
1.00
975372--975438
8
7.4
9
69
17
50
40
0
0
59
0.97
975360--975439
38
2.0
40
86
9
112
45
0
0
55
0.99
979296--979337
14
3.1
14
86
6
59
40
0
2
57
1.12
983569--983612
14
3.3
14
75
12
56
56
2
0
40
1.11
983572--983627
26
2.2
26
93
0
94
53
3
0
42
1.18
985605--985645
2
20.5
2
89
0
64
51
4
0
43
1.23
987782--987818
17
2.2
17
90
0
56
51
0
0
48
1.00
988205--988246
17
2.5
17
88
7
59
38
0
2
59
1.10
988541--988628
24
3.6
24
76
14
83
45
2
2
50
1.27
990181--990214
16
2.0
18
88
11
54
52
0
0
47
1.00
991729--991780
19
2.8
18
74
11
52
48
0
0
51
1.00
991737--991822
35
2.5
35
76
14
88
53
2
0
44
1.13
994544--994602
30
2.0
30
83
6
75
59
0
0
40
0.97
995272--995309
11
3.5
11
92
0
67
42
7
7
42
1.63
996714--996945
49
4.7
50
81
4
247
24
25
17
32
1.97
996714--996957
101
2.5
97
84
7
328
25
25
17
32
1.96
996773--997042
101
2.7
99
82
2
290
23
26
17
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
997798--997854
13
3.9
13
76
24
60
35
14
17
33
1.90
997811--997873
19
3.7
18
74
24
64
34
12
15
36
1.86
997797--997881
32
2.7
32
96
0
152
34
12
16
36
1.87
997902--997978
20
3.8
20
83
8
102
37
14
11
36
1.82
1000201--1000286
1
86.0
1
81
0
91
1
3
5
89
0.63
1000202--1000286
12
6.9
12
85
9
118
1
3
5
89
0.63
1000194--1000272
38
2.0
39
95
4
142
2
7
5
84
0.84
1000200--1000286
38
2.3
38
88
2
140
1
4
5
88
0.67
1000294--1000326
16
2.1
16
100
0
66
18
33
6
42
1.75
1013869--1013895
13
2.1
13
100
0
54
14
37
14
33
1.88
1015080--1015121
20
2.1
20
95
0
75
45
9
0
45
1.36
1015569--1015623
28
2.0
28
82
7
67
52
0
1
45
1.11
1016355--1016400
16
2.9
16
75
18
51
36
0
0
63
0.95
1016371--1016409
20
2.0
19
95
5
69
41
0
0
58
0.98
1016372--1016417
19
2.3
20
88
3
67
41
0
0
58
0.98
1016982--1017044
26
2.4
25
77
12
65
22
4
7
65
1.38
1017329--1017370
17
2.4
18
76
11
52
64
4
0
30
1.14
1018461--1018501
20
2.0
21
86
13
59
48
0
2
48
1.14
1018552--1018587
19
1.9
19
88
5
56
61
2
0
36
1.11
1020244--1020282
19
2.0
20
85
9
55
41
0
0
58
0.98
1020338--1020379
15
2.6
16
88
7
59
21
0
2
76
0.90
1020473--1020535
10
6.3
10
75
17
51
42
0
0
57
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1020472--1020535
25
2.5
24
80
14
67
43
0
0
56
0.99
1021377--1021420
23
2.0
21
86
8
61
68
0
2
29
1.02
1021450--1021510
32
1.9
32
83
6
79
40
1
8
49
1.42
1021555--1021607
21
2.5
21
87
0
70
47
0
0
52
1.00
1021572--1021622
21
2.3
21
90
10
75
37
0
1
60
1.08
1021744--1021850
35
2.9
35
77
14
101
49
0
0
50
1.00
1023592--1023654
33
1.9
32
84
9
83
53
3
6
36
1.42
1023661--1023742
42
1.9
43
85
7
114
50
1
3
45
1.27
1023682--1023728
24
1.9
25
86
4
69
48
0
2
48
1.13
1023609--1023745
42
3.3
42
76
12
113
52
1
4
41
1.30
1026463--1026531
21
3.2
21
74
8
68
71
1
2
24
1.09
1029896--1029946
19
2.6
19
81
9
59
50
1
0
47
1.12
1034672--1034715
21
2.1
21
100
0
88
43
13
25
18
1.86
1035731--1035809
27
3.0
26
83
1
95
26
6
17
49
1.71
1036667--1036702
18
1.9
19
88
5
56
16
0
33
50
1.46
1038881--1038913
14
2.4
14
85
5
50
78
0
21
0
0.75
1038930--1038967
18
2.1
18
85
9
51
39
0
0
60
0.97
1038962--1038996
18
1.9
18
100
0
70
42
0
0
57
0.99
1039041--1039093
27
2.0
27
85
7
72
37
1
0
60
1.08
1039264--1039322
23
2.6
23
81
2
75
23
1
3
71
1.11
1039264--1039297
11
2.9
12
82
8
52
26
0
0
73
0.83

Tables:   1   2   3   4   5   6

The End!