genome.fa.s136.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1039917

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 665 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
819706--819737	2	16.0	2	100	0	64	50	0	0	50	1.00
820219--820299	20	4.1	20	66	23	62	43	0	0	56	0.99
820221--820307	27	3.2	26	79	12	88	41	0	0	58	0.98
820233--820300	18	3.8	18	78	20	72	41	0	0	58	0.98
820248--820323	13	5.6	14	72	10	59	36	0	0	63	0.95
820196--820332	26	5.0	27	74	16	79	37	0	0	62	1.01
820227--820301	7	11.1	7	72	21	54	41	0	0	58	0.98
820268--820340	24	3.0	24	76	13	62	38	0	0	61	0.96
823836--823879	23	2.0	22	95	4	79	40	0	0	59	0.98
825899--825942	17	2.4	19	88	7	65	27	2	0	70	0.99
826337--826374	2	19.0	2	94	0	67	47	0	52	0	1.00
827434--827491	22	2.6	22	72	22	57	46	3	0	50	1.18
827997--828079	11	6.8	12	70	22	57	63	0	0	36	0.94
827994--828066	33	2.2	31	81	15	85	65	0	0	34	0.93
827997--828063	24	2.9	24	78	13	68	64	0	0	35	0.94
828040--828082	16	2.5	18	81	14	63	60	0	0	39	0.97
828061--828152	43	2.1	45	83	4	116	53	3	2	41	1.29
831349--831380	14	2.3	15	89	10	50	50	0	6	43	1.27
833656--833681	2	13.0	2	100	0	52	50	0	0	50	1.00
833679--833729	4	12.8	4	100	0	102	25	0	23	50	1.49
834643--834669	9	3.0	9	100	0	54	66	0	11	22	1.22
834694--834718	11	2.3	11	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836510--836573	29	2.2	29	86	10	87	56	0	0	43	0.99
836531--836584	24	2.2	24	83	6	74	62	0	0	37	0.95
836880--836931	18	2.8	18	85	8	68	63	0	1	34	1.06
837556--837657	27	3.5	27	75	19	82	58	0	0	41	0.98
837572--837652	32	2.5	33	82	11	107	56	0	0	43	0.99
837595--837649	17	3.4	17	75	25	64	56	0	0	43	0.99
839129--839165	16	2.3	16	90	0	56	37	0	5	56	1.22
839313--839389	32	2.4	32	82	6	95	46	1	3	48	1.28
840606--840637	2	16.0	2	100	0	64	50	0	0	50	1.00
840807--840848	14	2.8	15	82	10	50	38	2	2	57	1.25
844575--844612	20	1.9	20	84	10	51	0	10	5	84	0.77
846028--846093	30	2.2	30	86	7	91	40	6	0	53	1.26
846919--846954	2	18.0	2	100	0	72	50	0	0	50	1.00
847173--847244	31	2.5	28	78	12	74	41	0	1	56	1.07
847187--847255	31	2.2	31	82	5	86	40	2	1	55	1.24
847252--847297	14	3.3	14	82	11	58	28	0	0	71	0.86
847251--847297	12	3.9	12	82	17	62	27	0	0	72	0.85
849956--849985	2	15.0	2	100	0	60	50	0	0	50	1.00
852705--852756	19	2.5	20	87	9	70	44	0	5	50	1.26
854364--854393	2	15.0	2	100	0	60	50	0	0	50	1.00
857089--857131	21	2.0	22	95	4	79	37	13	16	32	1.88
857653--857682	9	3.2	9	90	9	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858056--858082	3	9.0	3	100	0	54	66	0	0	33	0.92
861789--861870	24	3.5	24	72	12	71	40	2	0	57	1.12
861789--861855	5	13.6	5	72	18	52	38	1	0	59	1.06
863192--863289	2	49.0	2	85	0	124	48	7	1	42	1.37
870094--870166	16	4.4	16	74	16	67	36	1	0	61	1.05
870107--870164	17	3.5	17	69	23	52	34	1	0	63	1.04
872583--872660	31	2.5	31	87	2	113	39	29	3	26	1.74
873157--873196	2	20.0	2	94	0	71	47	0	52	0	1.00
880277--880301	10	2.5	10	100	0	50	92	0	0	8	0.40
883661--883706	2	23.0	2	100	0	92	50	0	50	0	1.00
884164--884222	14	4.2	13	81	14	64	40	0	0	59	0.97
884163--884212	15	3.6	14	82	12	59	38	0	0	62	0.96
885444--885504	17	3.8	16	79	16	72	42	0	1	55	1.09
885452--885504	16	3.3	16	78	17	65	43	0	0	56	0.99
885481--885528	21	2.3	20	79	10	51	50	0	0	50	1.00
885904--885941	19	2.0	19	85	10	51	2	7	28	60	1.38
890034--890071	19	2.0	20	89	5	60	28	2	0	68	1.03
891596--891678	35	2.5	31	84	7	94	55	0	1	43	1.07
891610--891679	20	3.4	19	76	11	68	58	0	0	41	0.98
891935--891966	3	10.7	3	93	0	55	31	3	0	65	1.08
891996--892042	21	2.2	21	88	0	67	46	10	12	29	1.76
893047--893081	16	2.1	18	89	10	56	34	2	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893063--893111	24	2.1	22	81	7	53	42	2	0	55	1.11
896336--896379	22	2.0	22	100	0	88	27	9	18	45	1.79
896782--896810	2	14.5	2	100	0	58	48	0	0	51	1.00
898018--898091	35	2.2	34	81	11	82	45	0	1	52	1.09
900328--900370	22	2.0	22	85	0	59	41	11	4	41	1.62
901042--901084	21	2.0	23	90	9	72	72	0	0	27	0.85
906744--906784	17	2.4	16	84	11	55	60	0	0	39	0.96
907546--907588	22	1.9	22	90	4	68	32	0	0	67	0.91
907546--907601	23	2.3	23	84	6	67	32	0	0	67	0.91
907803--907841	21	1.9	21	89	5	62	74	0	0	25	0.82
907796--907841	14	3.1	15	78	15	51	71	0	2	26	0.97
908394--908430	2	18.5	2	100	0	74	51	0	48	0	1.00
913113--913143	14	2.2	14	94	0	53	0	22	0	77	0.77
914840--914873	2	17.0	2	93	0	59	0	47	0	52	1.00
915380--915425	18	2.6	17	83	10	56	52	0	0	47	1.00
918113--918146	18	1.9	17	94	5	59	67	0	0	32	0.91
918465--918522	21	2.6	22	83	5	73	48	0	0	51	1.00
920672--920739	31	2.2	30	76	2	73	44	1	0	54	1.09
920818--920878	30	2.0	30	84	6	79	50	6	27	14	1.68
921059--921153	29	3.3	28	72	20	88	41	0	0	58	0.98
921116--921150	16	2.2	16	89	0	52	42	0	0	57	0.99
928890--928984	47	2.0	49	83	6	124	49	1	2	47	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931756--931822	17	3.9	18	79	16	63	62	1	2	32	1.19
931775--931816	15	2.7	15	85	14	50	66	0	0	33	0.92
932744--932832	30	3.0	29	79	9	99	40	7	1	50	1.39
932860--932929	29	2.4	30	82	2	88	57	0	5	37	1.23
934149--934186	6	6.3	6	82	11	51	50	0	0	50	1.00
934148--934185	11	3.3	11	86	13	58	52	0	0	47	1.00
934149--934187	18	2.1	19	90	4	62	48	0	0	51	1.00
935002--935042	21	2.0	21	90	0	64	60	4	19	14	1.51
940628--940653	6	4.3	6	100	0	52	15	15	19	50	1.79
943522--943654	69	1.9	69	100	0	266	42	15	10	31	1.81
943536--943644	33	3.2	33	64	7	92	40	15	11	33	1.82
944400--944445	18	2.4	19	82	14	58	45	4	0	50	1.21
944742--944788	18	2.6	17	80	9	58	76	2	12	8	1.09
945103--945149	4	11.8	4	100	0	94	76	0	0	23	0.78
945849--945876	13	2.2	13	100	0	56	53	0	7	39	1.28
946095--946120	2	13.0	2	100	0	52	50	0	0	50	1.00
951709--951773	32	2.1	32	83	13	84	49	7	6	36	1.57
953213--953257	23	1.9	24	86	4	65	60	0	0	40	0.97
953724--953755	2	16.0	2	100	0	64	50	0	0	50	1.00
953931--953965	16	2.2	15	90	10	52	62	0	2	34	1.10
953931--954039	17	6.4	16	67	23	62	55	0	3	40	1.17
953983--954037	16	3.4	16	74	20	60	54	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954874--954915	22	2.0	21	86	13	59	33	0	2	64	1.07
955544--955583	16	2.4	17	83	4	55	47	5	0	47	1.24
956103--956128	2	13.0	2	100	0	52	50	0	0	50	1.00
958236--958277	22	1.9	22	85	0	57	66	2	0	30	1.04
958308--958485	90	2.0	90	83	6	227	46	10	16	27	1.79
959516--959557	15	2.9	14	75	25	50	52	2	2	42	1.27
963141--963178	19	2.0	20	89	5	60	68	0	2	28	1.03
964863--964894	2	16.0	2	100	0	64	50	0	0	50	1.00
968252--968286	5	7.2	5	93	6	63	57	0	0	42	0.99
970286--970345	21	2.8	22	78	19	72	45	0	0	55	0.99

Tables:   1   2   3   4   5   6