genome.fa.s136.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold136
Parameters: 2 7 7 80 10 50 1000
Length:  1039917

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 665 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655019--655151	35	3.7	37	75	17	102	59	3	0	37	1.13
655100--655149	21	2.4	22	80	16	61	62	2	0	36	1.07
654970--655151	8	23.0	8	65	26	68	60	2	0	36	1.09
655080--655160	27	2.9	27	77	13	85	55	3	0	40	1.17
655175--655223	11	4.4	12	75	17	52	40	0	0	59	0.98
655175--655223	22	2.2	22	85	0	62	40	0	0	59	0.98
655102--655251	27	5.4	28	69	19	84	49	1	0	49	1.09
655861--655925	13	5.2	13	73	14	55	56	1	1	40	1.18
655912--655973	17	3.9	16	75	23	60	46	0	0	53	1.00
655922--655995	23	3.2	22	80	16	71	43	0	1	55	1.08
655940--655982	14	2.9	15	86	6	61	41	0	0	58	0.98
656358--656406	22	2.3	22	82	3	64	59	0	0	40	0.98
656359--656408	21	2.5	20	78	12	57	56	0	0	44	0.99
657040--657064	2	12.5	2	100	0	50	48	0	0	52	1.00
661487--661520	2	17.0	2	100	0	68	50	0	0	50	1.00
662353--662399	17	2.8	17	75	9	51	42	2	2	53	1.25
663186--663210	12	2.1	12	100	0	50	32	44	16	8	1.76
665722--665752	3	10.0	3	93	6	53	0	35	0	64	0.94
671131--671188	11	4.9	11	81	10	62	63	0	0	36	0.94
671141--671224	17	4.8	17	73	16	73	61	1	0	36	1.04
671131--671245	36	3.1	37	69	23	96	62	1	0	35	1.06
677316--677363	19	2.7	18	87	9	64	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677309--677370	8	6.9	9	82	15	67	45	0	0	54	0.99
677700--677724	2	12.5	2	100	0	50	52	0	0	48	1.00
681873--681900	12	2.3	12	100	0	56	35	0	14	50	1.43
687389--687419	2	15.5	2	100	0	62	51	0	0	48	1.00
687736--687816	16	5.2	16	73	10	62	62	2	0	34	1.08
689428--689492	23	2.8	24	71	15	64	56	0	0	43	0.99
690129--690173	17	2.8	17	83	6	58	75	0	0	24	0.80
690130--690191	29	2.1	30	82	8	74	70	0	1	27	0.96
690185--690262	30	2.6	30	86	11	99	61	0	1	37	1.04
690217--690275	14	4.3	14	72	20	52	64	0	0	35	0.94
690226--690275	20	2.5	20	84	12	59	62	0	0	38	0.96
690499--690543	20	2.1	22	84	12	58	42	4	0	53	1.21
692504--692576	24	3.2	22	73	23	62	42	1	0	56	1.08
693125--693171	2	23.5	2	95	0	85	48	2	0	48	1.13
695249--695278	13	2.3	13	100	0	60	76	0	0	23	0.78
695294--695339	15	3.1	16	79	14	55	0	28	0	71	0.86
695299--695339	12	3.3	12	93	3	64	0	26	0	73	0.84
695394--695423	15	2.0	15	93	0	51	56	0	6	36	1.26
695414--695461	23	2.1	22	84	3	60	66	6	0	27	1.15
695625--695685	9	6.5	10	71	21	60	67	0	0	32	0.91
695624--695704	33	2.3	34	85	12	103	65	0	0	34	0.93
695624--695704	37	2.3	33	85	12	101	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695631--695707	35	2.2	35	84	11	95	67	0	0	32	0.91
695707--695781	4	19.8	4	79	8	77	1	20	0	78	0.82
695707--695781	11	6.6	12	79	10	77	1	20	0	78	0.82
697148--697186	2	19.5	2	94	0	69	46	2	51	0	1.14
697619--697643	2	12.5	2	100	0	50	48	0	52	0	1.00
697678--697715	13	2.8	13	81	18	51	28	23	2	44	1.67
706462--706536	23	3.2	24	83	7	75	53	0	1	45	1.08
706483--706542	23	2.5	24	89	2	86	55	0	1	43	1.10
706471--706544	11	6.5	11	73	14	53	56	0	1	41	1.07
715544--715571	3	9.3	3	100	0	56	64	35	0	0	0.94
716957--716988	2	16.0	2	100	0	64	50	0	0	50	1.00
717270--717336	18	3.8	18	71	15	59	52	0	0	47	1.00
717333--717374	15	2.8	15	82	10	50	40	4	0	54	1.21
719425--719453	15	2.0	15	93	6	51	27	0	10	62	1.28
719458--719484	5	5.4	5	100	0	54	40	0	0	59	0.98
719504--719550	22	2.1	22	84	7	60	46	0	0	53	1.00
719806--719860	3	18.3	3	92	7	94	67	0	1	30	1.01
726697--726807	57	1.9	57	96	0	204	36	13	25	24	1.92
735350--735383	14	2.6	14	90	9	54	35	0	2	61	1.11
742907--742958	16	3.2	16	80	0	50	30	0	11	57	1.34
743356--743381	2	13.0	2	100	0	52	50	0	0	50	1.00
745834--745859	6	4.3	6	100	0	52	34	15	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746861--746894	18	1.9	18	88	5	52	67	0	0	32	0.91
747376--747418	15	2.8	16	79	13	54	53	0	2	44	1.13
755162--755206	2	22.5	2	100	0	90	51	0	48	0	1.00
757115--757161	23	2.0	24	87	4	69	61	0	0	38	0.96
760901--760936	18	2.0	18	100	0	72	38	33	5	22	1.77
763463--763522	29	2.0	30	87	3	86	51	0	3	45	1.17
763487--763539	23	2.3	23	83	3	72	58	1	0	39	1.09
763634--763668	17	2.1	17	89	10	54	40	0	5	54	1.24
763664--763769	29	3.5	29	78	11	106	53	0	3	42	1.18
763755--763804	26	1.9	26	88	8	75	60	0	0	40	0.97
764605--764630	3	8.7	3	100	0	52	34	0	0	65	0.93
764960--765008	19	2.6	20	84	9	59	42	0	0	57	0.99
764944--765004	25	2.4	25	78	10	61	47	0	0	52	1.00
765473--765513	21	2.0	21	85	9	57	41	4	0	53	1.22
765537--765575	19	2.1	19	85	9	53	48	5	0	46	1.24
765484--765587	49	2.1	51	81	13	119	44	5	0	50	1.26
765595--765627	2	16.5	2	100	0	66	51	0	0	48	1.00
766092--766138	18	2.6	18	78	18	53	63	0	0	36	0.94
766085--766151	20	3.6	18	79	15	66	58	0	0	41	0.98
766113--766151	18	2.1	17	86	13	51	58	0	0	41	0.98
766337--766394	19	3.1	19	76	11	66	44	0	0	55	0.99
766338--766420	38	2.2	36	83	14	98	42	0	1	56	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770403--770482	37	2.2	37	86	2	117	47	25	11	16	1.79
772409--772451	19	2.2	19	87	8	59	69	11	9	9	1.36
772697--772737	5	8.8	5	89	10	61	19	0	0	80	0.71
772697--772737	9	4.4	9	82	17	57	19	0	0	80	0.71
773154--773214	31	1.9	31	83	9	79	44	0	0	55	0.99
773177--773217	22	2.0	20	85	9	55	39	0	0	60	0.96
775057--775097	14	2.9	15	83	16	52	65	0	2	31	1.05
775278--775321	14	3.3	14	84	6	56	50	0	0	50	1.00
775273--775313	14	2.9	14	81	0	55	46	0	0	53	1.00
782277--782337	22	2.8	21	82	7	59	62	1	1	34	1.15
782960--782984	3	8.3	3	100	0	50	68	0	0	32	0.90
783217--783262	23	2.0	23	86	0	65	52	4	4	39	1.41
783974--784023	25	2.0	26	92	4	84	62	2	0	36	1.07
784004--784046	23	1.9	22	85	4	59	53	0	0	46	1.00
784793--784848	19	3.0	18	82	10	76	57	0	0	42	0.99
784797--784848	9	5.6	9	80	8	59	57	0	0	42	0.98
784782--784845	14	4.5	14	80	7	67	59	0	0	40	0.97
784796--784845	5	10.4	5	79	16	61	58	0	0	42	0.98
789153--789178	2	13.0	2	100	0	52	50	0	0	50	1.00
799545--799583	16	2.3	18	86	8	55	53	0	2	43	1.14
800146--800211	31	2.1	31	83	5	80	16	27	7	48	1.73
803478--803527	21	2.4	19	74	22	55	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803827--803861	3	11.7	3	100	0	70	68	0	0	31	0.90
804043--804079	19	2.0	18	89	5	56	67	0	0	32	0.91
805186--805237	20	2.7	19	88	8	79	28	0	0	71	0.87
805453--805479	2	13.5	2	100	0	54	48	0	0	51	1.00
807661--807705	20	2.2	20	80	7	56	55	0	0	44	0.99
811128--811152	1	25.0	1	100	0	50	100	0	0	0	0.00
813444--813491	16	3.1	15	74	11	51	45	0	0	54	0.99
815844--815934	38	2.4	38	92	1	148	29	16	7	46	1.75
817008--817040	15	2.3	15	90	10	52	45	0	0	54	0.99
817014--817057	23	1.9	23	86	9	63	47	0	0	52	1.00

Tables:   1   2   3   4   5   6