genome.fa.s147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold147
Parameters: 2 7 7 80 10 50 1000
Length:  880509

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 488 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20008--20226	58	3.8	58	74	7	169	17	20	31	30	1.96
20083--20273	58	3.3	58	72	5	152	16	22	32	28	1.96
27454--27520	34	2.0	34	96	0	125	34	10	28	26	1.90
34585--34612	2	14.0	2	100	0	56	50	0	0	50	1.00
35138--35168	2	15.5	2	100	0	62	51	0	0	48	1.00
39004--39071	10	7.0	10	73	21	56	30	0	0	69	0.89
38994--39071	20	4.1	20	73	20	76	29	1	0	69	0.97
38978--39061	12	7.0	12	71	20	52	26	1	1	71	1.01
38976--39060	31	2.8	30	80	10	84	27	1	1	70	1.02
42329--42363	14	2.5	14	100	0	70	51	17	11	20	1.75
42589--42621	13	2.5	13	90	9	50	30	0	3	66	1.06
44056--44081	12	2.2	12	100	0	52	53	30	0	15	1.42
45198--45241	2	22.0	2	100	0	88	0	50	0	50	1.00
48324--48350	13	2.1	13	100	0	54	55	0	0	44	0.99
48567--48612	11	4.3	11	76	13	51	67	0	0	32	0.91
48603--48640	15	2.5	16	83	12	53	39	0	2	57	1.12
48620--48723	31	3.2	31	80	15	81	47	0	0	50	1.14
48799--48852	17	3.3	17	75	17	60	57	0	0	42	0.98
48958--49008	15	3.5	15	78	2	59	52	1	0	45	1.12
49385--49421	16	2.3	16	90	0	56	62	2	0	35	1.10
49824--49954	69	1.9	69	80	3	156	49	9	3	37	1.53
49924--49954	16	1.9	16	93	0	53	64	6	0	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50237--50288	6	8.7	6	86	0	77	61	15	0	23	1.33
52825--52855	3	10.3	3	100	0	62	32	0	0	67	0.91
52854--52880	3	9.0	3	100	0	54	33	0	33	33	1.58
54794--54837	2	22.0	2	100	0	88	50	0	0	50	1.00
55023--55053	15	2.1	15	93	0	53	25	3	0	70	1.02
56380--56419	12	3.4	12	86	6	55	80	2	17	0	0.83
56360--56429	23	3.1	23	81	6	72	75	5	17	1	1.06
56380--56464	13	6.5	12	70	20	55	77	2	16	3	1.01
57038--57078	21	2.0	21	85	9	57	21	14	9	53	1.70
57161--57435	58	4.7	57	75	9	232	27	7	14	50	1.70
57158--57251	29	3.2	29	68	19	79	28	5	13	52	1.63
57299--57390	29	3.1	29	63	23	66	28	5	16	50	1.67
57289--57516	59	3.9	58	77	9	178	28	6	14	50	1.68
57504--57596	48	1.9	48	85	8	127	30	11	13	44	1.80
60231--60291	30	2.0	30	90	0	95	24	9	24	40	1.85
60946--61044	43	2.2	44	78	7	112	42	1	2	54	1.18
61002--61061	16	3.6	17	76	13	54	50	1	1	46	1.21
63323--63368	2	23.5	2	91	4	76	50	0	2	47	1.13
63367--63398	17	1.9	17	93	6	57	12	31	9	46	1.73
63425--63455	2	15.5	2	100	0	62	48	0	0	51	1.00
63742--63782	2	20.5	2	100	0	82	48	0	0	51	1.00
65295--65390	41	2.5	38	71	14	90	36	0	1	62	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65303--65393	21	4.4	21	70	10	53	34	0	1	64	1.01
66062--66113	22	2.4	21	78	6	59	65	1	0	32	1.04
66071--66113	22	2.0	22	86	4	61	65	2	0	32	1.06
66830--66870	2	20.5	2	100	0	82	51	0	0	48	1.00
72934--72979	20	2.3	20	88	7	67	50	15	13	21	1.78
73890--73914	13	1.9	13	100	0	50	32	8	16	44	1.76
74251--74293	3	14.3	3	100	0	86	32	0	0	67	0.91
75658--75698	2	20.5	2	84	0	55	48	2	2	46	1.28
76077--76106	2	15.0	2	100	0	60	50	0	0	50	1.00
76961--76986	5	5.2	5	100	0	52	38	0	0	61	0.96
77617--77648	2	16.0	2	100	0	64	50	0	0	50	1.00
80123--80280	79	2.0	79	97	0	298	33	19	20	25	1.97
83471--83514	19	2.3	19	85	11	63	20	11	4	63	1.44
83867--83893	2	13.5	2	100	0	54	48	0	51	0	1.00
84995--85023	2	14.5	2	100	0	58	0	51	0	48	1.00
85617--85653	2	19.0	2	94	5	67	51	0	0	48	1.00
112796--112836	21	2.0	21	85	4	57	51	4	0	43	1.23
112855--112923	22	3.0	23	72	10	61	59	0	0	40	0.97
112914--112972	22	2.7	22	73	19	61	52	1	0	45	1.10
114257--114290	1	34.0	1	100	0	68	0	0	0	100	0.00
114461--114485	3	8.3	3	100	0	50	64	0	0	36	0.94
114928--114984	2	28.5	2	100	0	114	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116867--116891	3	8.3	3	100	0	50	68	0	0	32	0.90
118386--118424	20	1.9	21	84	5	53	23	7	17	51	1.71
123647--123719	27	2.7	27	80	6	85	28	6	17	46	1.74
128246--128335	28	3.4	27	79	8	78	26	6	21	45	1.76
128416--128465	25	2.0	26	88	11	77	18	32	6	44	1.74
129062--129097	2	18.0	2	100	0	72	50	0	0	50	1.00
131445--131473	4	7.2	4	100	0	58	75	0	0	24	0.80
133709--133740	2	16.5	2	93	6	57	46	0	0	53	1.00
142511--142574	26	2.6	23	73	20	58	53	0	3	43	1.16
143407--143452	16	2.9	16	87	3	58	56	0	2	41	1.11
143413--143452	3	13.0	3	84	5	53	60	0	0	40	0.97
144588--144655	19	3.9	18	74	16	63	51	0	1	47	1.09
144697--144751	22	2.6	22	77	5	60	56	1	0	41	1.10
144817--144855	18	2.2	19	86	9	55	48	0	0	51	1.00
146762--146803	2	21.0	2	100	0	84	50	0	0	50	1.00
147214--147242	2	14.5	2	100	0	58	51	0	0	48	1.00
148544--148586	5	8.6	5	92	0	68	0	23	0	76	0.78
151098--151139	2	21.0	2	90	0	66	45	0	2	52	1.13
153695--153731	5	7.4	5	87	0	56	24	0	54	21	1.45
153695--153730	10	3.6	10	96	0	63	25	0	52	22	1.47
154681--154714	17	2.0	18	88	11	54	32	0	5	61	1.20
154917--154951	16	2.2	16	89	0	52	40	11	5	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155212--155288	16	4.8	16	80	0	100	46	9	10	33	1.70
155190--155306	32	3.7	32	78	4	103	48	9	10	31	1.69
155190--155304	48	2.4	48	97	0	212	48	9	9	32	1.68
155198--155304	16	6.7	16	77	4	81	49	10	9	30	1.68
155474--155515	16	2.6	16	80	0	57	57	4	2	35	1.33
163672--163700	6	4.8	6	100	0	58	0	17	0	82	0.66
163800--163889	43	2.1	43	93	2	153	32	8	2	56	1.42
164564--164596	2	16.5	2	100	0	66	48	0	0	51	1.00
165790--165832	10	4.7	9	82	11	52	83	2	13	0	0.74
165783--165830	17	2.9	16	81	12	53	83	2	14	0	0.74
168393--168613	34	6.5	33	81	9	257	41	26	7	24	1.81
168395--168613	68	3.2	67	85	3	287	41	26	7	25	1.81
168393--168613	102	2.2	101	88	1	343	41	26	7	24	1.81
173021--173239	34	6.5	33	80	9	217	41	25	6	26	1.80
173023--173237	68	3.2	66	83	4	252	41	25	6	26	1.80
173021--173239	102	2.2	101	84	1	303	41	25	6	26	1.80
173798--173827	13	2.4	13	94	5	53	43	0	0	56	0.99
174345--174383	2	19.5	2	94	0	69	48	2	0	48	1.15
175339--175376	2	19.0	2	100	0	76	50	0	0	50	1.00
176188--176220	15	2.1	16	88	5	50	36	0	0	63	0.95
177116--177164	2	24.5	2	100	0	98	48	0	0	51	1.00
177230--177278	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180830--181233	109	3.7	109	88	1	576	33	8	14	43	1.76
181319--181549	110	2.1	109	81	4	266	34	10	12	41	1.78
182724--182809	44	2.0	44	97	0	163	34	19	13	31	1.91
188601--188957	177	2.0	178	97	0	680	34	22	17	25	1.95
194772--194929	68	2.3	68	87	1	219	33	0	17	48	1.53
194772--194929	34	4.7	34	80	3	185	33	0	17	48	1.53
195239--195290	19	2.7	19	90	0	77	30	23	13	32	1.93
199378--199424	22	2.1	22	88	0	67	17	8	25	48	1.74
199401--199549	34	4.4	34	80	5	149	24	6	25	43	1.77
199400--199541	68	2.1	68	89	2	214	25	6	25	42	1.78

Tables:   1   2   3   4   5