genome.fa.s147.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold147
Parameters: 2 7 7 80 10 50 1000
Length:  880509

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 488 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224466--224510	18	2.6	18	76	16	58	31	0	4	64	1.13
224615--224684	27	2.4	31	81	15	78	35	1	1	61	1.14
228104--228138	4	8.8	4	100	0	70	22	0	0	77	0.78
228791--228820	2	15.0	2	100	0	60	50	0	0	50	1.00
229420--229446	6	4.5	6	100	0	54	18	33	0	48	1.49
231697--231722	2	13.0	2	100	0	52	0	50	0	50	1.00
232641--232671	3	10.3	3	100	0	62	67	0	0	32	0.91
233690--233714	2	12.5	2	100	0	50	52	0	0	48	1.00
234858--234889	16	2.0	16	100	0	64	18	25	12	43	1.85
235480--235521	7	6.1	7	88	5	68	54	0	0	45	0.99
235479--235527	13	3.7	13	89	5	71	51	0	2	46	1.12
236414--236453	17	2.4	16	80	12	53	37	0	2	60	1.11
240902--241044	71	2.0	71	86	2	198	32	8	30	28	1.87
253034--253125	9	10.2	9	72	25	63	41	0	0	58	0.98
253047--253172	14	8.5	16	67	26	57	42	0	0	57	0.98
253034--253170	72	1.9	73	85	10	192	41	0	0	58	0.98
253053--253168	34	3.7	32	74	20	95	42	0	0	57	0.98
253052--253172	18	6.6	18	69	19	63	41	0	0	58	0.98
253683--253740	29	2.0	29	80	12	66	58	0	0	41	0.98
253866--253931	17	3.9	17	82	5	80	42	0	1	56	1.08
253866--253952	18	4.8	19	79	12	69	43	1	1	54	1.15
253922--253963	15	2.8	16	78	10	52	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255280--255306	4	6.8	4	100	0	54	22	0	0	77	0.76
269950--270020	27	2.6	27	86	6	90	46	19	7	26	1.75
271905--271950	21	2.1	22	84	4	58	19	30	19	30	1.97
274525--274595	27	2.6	27	88	6	99	46	23	7	22	1.76
275204--275354	80	1.9	80	87	0	221	30	21	9	39	1.84
279464--279536	19	3.9	18	77	8	74	38	19	16	26	1.92
281260--281303	23	2.0	22	86	4	61	47	0	4	47	1.22
282359--282411	2	27.0	2	88	3	81	45	0	1	52	1.11
299484--299539	28	2.0	27	86	10	78	37	1	1	58	1.19
300584--300613	2	15.0	2	100	0	60	50	0	0	50	1.00
308088--308123	2	18.0	2	100	0	72	50	0	50	0	1.00
314323--314426	20	5.4	20	75	18	89	41	0	0	58	0.98
314335--314409	30	2.7	28	78	15	84	41	0	0	58	0.98
314326--314414	39	2.3	38	82	7	117	43	0	0	56	0.99
314323--314396	30	2.5	30	77	14	82	40	0	0	59	0.97
317575--317631	28	2.1	28	87	6	82	26	17	14	42	1.87
319600--319641	10	4.2	10	78	9	50	47	2	0	50	1.14
319628--319697	27	2.6	26	73	13	70	51	0	1	47	1.09
320980--321037	16	3.7	16	73	13	57	36	0	0	63	0.94
321006--321068	22	3.0	22	81	9	78	39	0	0	60	0.97
326062--326090	2	14.5	2	100	0	58	51	48	0	0	1.00
328584--328632	17	3.0	16	82	11	55	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329700--329742	16	3.0	13	78	21	50	58	0	0	41	0.98
329688--329763	39	1.9	39	84	5	100	59	0	0	40	0.98
329712--329759	16	2.9	16	87	6	69	58	0	0	41	0.98
330659--330694	18	2.0	18	88	0	54	13	2	13	69	1.30
331026--331065	21	2.0	21	85	5	55	50	0	0	50	1.00
332007--332221	72	3.0	72	88	2	326	40	10	6	43	1.63
333127--333164	10	3.7	10	86	13	51	52	0	0	47	1.00
333667--333696	2	15.0	2	100	0	60	50	0	0	50	1.00
333748--333788	3	13.7	3	94	0	73	34	0	0	65	0.93
334439--334464	2	13.0	2	100	0	52	50	0	0	50	1.00
336514--336539	2	13.0	2	100	0	52	50	0	50	0	1.00
338695--338728	2	17.5	2	87	6	52	47	0	2	50	1.16
339631--339657	2	13.5	2	100	0	54	51	0	0	48	1.00
339928--339988	9	7.2	9	72	20	51	27	0	1	70	0.97
339928--339988	16	3.6	17	80	8	72	27	0	1	70	0.97
339919--339982	16	3.9	16	75	15	51	31	0	3	65	1.08
342581--342619	6	6.2	6	82	11	51	74	0	0	25	0.82
342580--342620	13	3.2	13	83	13	57	70	0	0	29	0.87
346872--346923	21	2.4	22	74	6	52	71	0	1	26	0.97
346867--346921	28	2.0	28	82	7	67	69	0	1	29	0.99
347079--347133	23	2.5	22	77	19	60	50	1	0	47	1.11
348926--348950	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353976--354061	27	3.1	27	67	21	70	40	4	0	54	1.21
354032--354086	16	3.4	17	75	25	55	45	0	0	54	0.99
354029--354092	32	2.0	33	87	3	94	48	0	0	51	1.00
354042--354097	16	3.5	16	79	13	62	53	0	0	46	1.00
354028--354099	33	2.1	34	82	7	94	51	0	0	48	1.00
354521--354562	16	2.6	16	78	14	50	42	0	0	57	0.99
354867--354908	21	2.0	22	85	4	59	23	4	2	69	1.20
354889--354943	17	3.5	16	74	16	53	25	7	1	65	1.28
354878--354926	25	2.0	24	88	4	71	22	10	2	65	1.34
354883--354935	25	2.1	25	82	6	63	24	9	1	64	1.34
354930--354985	21	2.8	20	84	12	78	33	1	1	62	1.16
359178--359210	2	16.5	2	100	0	66	0	48	0	51	1.00
359716--359755	20	2.1	19	90	4	62	47	0	0	52	1.00
359867--359907	21	1.9	22	90	5	66	31	0	0	68	0.90
361162--361215	12	4.2	12	76	9	54	44	1	1	51	1.22
362136--362242	46	2.3	46	100	0	214	25	14	29	29	1.95
365535--365576	14	2.9	14	78	21	50	59	0	0	40	0.97
365562--365636	30	2.6	28	76	16	80	54	2	2	40	1.28
365605--365663	17	3.5	17	72	25	54	57	1	1	38	1.19
365530--365682	20	7.3	20	66	26	61	58	1	1	38	1.18
365537--365682	10	14.7	10	67	21	51	58	1	2	38	1.18
367308--367339	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367775--367829	25	2.2	26	83	3	67	45	0	1	52	1.11
375775--375805	2	15.5	2	93	0	53	48	48	3	0	1.17
382047--382106	19	3.3	19	78	17	65	51	0	5	43	1.23
383209--383279	35	2.0	36	94	2	126	28	22	22	26	1.99
383848--383874	2	13.5	2	100	0	54	51	48	0	0	1.00
384692--384727	2	18.0	2	100	0	72	50	0	0	50	1.00
387013--387045	2	16.5	2	100	0	66	51	0	48	0	1.00
387837--387882	23	2.0	23	95	0	83	21	32	8	36	1.84
389758--390033	137	2.0	137	95	0	498	36	13	15	34	1.87
393363--393418	21	2.7	20	84	15	69	37	12	14	35	1.84
397093--397117	2	12.5	2	100	0	50	52	0	48	0	1.00
401696--401729	7	4.5	8	85	14	54	50	0	0	50	1.00
401682--401740	27	2.2	26	84	3	82	49	0	0	50	1.00
401680--401729	15	3.5	15	79	17	54	48	0	0	52	1.00
402434--402461	14	2.0	14	100	0	56	50	0	7	42	1.30
408494--408546	21	2.5	22	81	9	65	35	0	5	58	1.22
408610--408665	15	3.7	15	72	13	51	46	0	3	50	1.19
408650--408683	6	5.7	6	89	10	52	38	0	0	61	0.96
409538--409581	20	2.2	20	87	0	61	52	0	0	47	1.00
410419--410456	18	2.1	18	85	9	51	39	0	2	57	1.12
410431--410489	28	2.1	29	83	3	75	52	0	1	45	1.10
410451--410489	14	2.8	13	85	11	51	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417498--417858	79	4.6	79	80	4	401	34	12	24	28	1.92
417518--417857	78	4.3	77	81	5	344	35	12	23	28	1.91
417549--417840	156	1.9	157	86	5	421	33	13	25	28	1.94
417498--417858	157	2.3	158	80	5	428	34	12	24	28	1.92
422886--422936	26	2.0	26	88	0	75	31	1	27	39	1.68
423176--423209	18	1.9	18	88	5	52	73	5	2	17	1.16
427227--427261	3	11.7	3	93	0	61	0	31	0	68	0.90
428725--428782	11	5.2	11	73	10	55	62	1	1	34	1.16
428725--428782	12	5.2	12	75	10	52	62	1	1	34	1.16
429565--429606	21	2.0	22	90	4	68	35	0	0	64	0.94

Tables:   1   2   3   4   5