genome.fa.s147.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold147
Parameters: 2 7 7 80 10 50 1000
Length:  880509

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 488 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429568--429612	15	3.0	15	81	9	56	33	0	0	66	0.92
429614--429667	21	2.6	22	80	11	62	62	1	0	35	1.06
429662--429703	20	2.1	20	86	8	59	52	7	4	35	1.50
430707--430734	2	14.0	2	100	0	56	50	0	0	50	1.00
435359--435399	10	4.3	10	75	12	50	26	0	2	70	0.99
437992--438022	13	2.4	13	94	0	53	35	0	0	64	0.94
438055--438102	18	2.7	18	81	12	55	50	0	0	50	1.00
438453--438503	6	8.7	6	84	4	68	39	1	0	58	1.09
441386--441437	17	3.1	16	78	16	52	50	0	0	50	1.00
441411--441448	12	2.9	13	84	11	51	55	0	0	44	0.99
442761--442876	29	4.2	28	69	17	73	57	0	0	42	0.98
442803--442839	16	2.2	18	85	9	51	56	0	0	43	0.99
442773--442848	28	2.6	29	74	16	75	55	0	0	44	0.99
442773--442853	30	2.7	31	74	14	80	55	0	0	44	0.99
443021--443054	15	2.5	13	86	13	50	55	0	0	44	0.99
445320--445363	23	1.9	23	90	9	72	59	0	2	38	1.10
446535--446617	32	2.5	32	82	3	94	53	3	3	39	1.36
446588--446656	28	2.5	28	82	15	74	56	1	1	40	1.17
448386--448428	2	21.5	2	100	0	86	51	0	0	48	1.00
449482--449577	27	3.6	27	84	0	102	11	12	52	23	1.72
450849--450928	8	9.9	8	69	25	53	32	2	2	62	1.22
450869--450921	10	5.6	10	77	20	60	32	0	1	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450841--450920	27	2.9	28	80	10	92	33	1	2	62	1.16
451294--451325	16	2.1	16	88	11	50	50	0	0	50	1.00
451353--451422	21	3.3	20	74	20	63	58	0	1	40	1.07
452085--452122	13	2.9	13	100	0	76	31	13	0	55	1.38
452787--452822	4	8.8	4	87	6	54	77	0	2	19	0.88
453782--453829	24	2.0	24	84	12	62	47	0	4	47	1.21
454141--454171	3	10.3	3	100	0	62	32	0	0	67	0.91
454300--454400	33	2.7	39	79	17	142	10	11	53	23	1.69
454360--455165	60	13.2	60	93	2	1299	9	13	53	23	1.69
455046--455169	39	3.4	37	82	13	157	10	9	57	22	1.61
456379--456439	9	6.4	10	75	17	58	42	0	0	57	0.98
456385--456452	10	7.3	9	76	20	52	36	0	0	63	0.95
456371--456412	20	2.1	20	86	8	59	45	0	0	54	0.99
456377--456452	36	2.1	38	85	14	106	38	0	0	61	0.96
456363--456448	27	3.1	27	76	12	95	43	0	0	56	0.99
456457--456517	22	2.8	21	82	7	59	37	1	3	57	1.25
458451--458481	2	15.5	2	100	0	62	51	0	0	48	1.00
460239--460323	33	2.6	33	86	3	127	12	15	49	22	1.78
460210--460310	27	3.5	27	73	15	85	12	13	49	23	1.77
460239--460405	33	5.1	32	70	9	106	13	11	55	19	1.69
460393--460463	6	11.8	6	76	5	63	15	1	67	15	1.30
460392--460463	24	3.0	24	83	4	92	15	1	68	15	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460392--460463	12	6.0	12	73	0	72	15	1	68	15	1.29
460625--460661	17	2.2	18	86	13	53	59	0	2	37	1.12
460623--460806	92	2.0	93	86	6	259	43	4	13	38	1.65
460716--460748	16	2.0	17	88	5	50	60	0	3	36	1.12
461042--461101	19	3.1	19	77	13	61	45	0	0	55	0.99
461034--461124	46	2.0	46	86	4	130	39	0	1	59	1.05
461062--461115	27	2.0	27	88	0	81	37	0	1	61	1.07
461573--461610	14	2.6	15	87	4	60	34	5	0	60	1.19
464217--464243	2	13.5	2	100	0	54	51	0	0	48	1.00
465780--465808	3	9.7	3	100	0	58	31	0	0	68	0.89
466943--467013	28	2.5	28	86	0	88	23	19	33	22	1.97
467002--467127	53	2.4	51	79	11	155	32	11	24	31	1.90
467022--467124	53	1.9	54	90	2	163	36	8	23	31	1.85
469486--469511	13	2.0	13	100	0	52	38	15	15	30	1.88
469465--469531	33	2.0	33	88	0	98	43	16	14	25	1.86
469551--469618	19	3.9	18	76	23	83	38	14	11	35	1.83
469573--469597	13	1.9	13	100	0	50	32	16	16	36	1.90
469554--469616	32	2.0	32	96	0	117	36	15	12	34	1.86
469674--469730	21	2.7	21	94	0	96	38	17	10	33	1.84
470166--470204	12	3.2	12	89	7	53	71	2	0	25	0.98
470635--470723	45	2.0	45	88	0	133	44	8	16	29	1.78
471235--471265	14	2.2	14	94	0	53	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471990--472035	7	6.3	7	85	9	56	45	0	0	54	0.99
471990--472035	15	3.1	14	81	9	56	45	0	0	54	0.99
473119--473159	20	2.0	20	90	9	66	39	0	0	60	0.96
475209--475265	13	3.9	14	73	13	53	35	0	0	64	0.93
475215--475255	16	2.4	18	84	8	59	29	0	0	70	0.87
475243--475296	24	2.2	24	87	9	74	50	0	0	50	1.00
475196--475290	43	2.2	42	76	14	95	42	0	1	56	1.06
476144--476170	14	1.9	14	100	0	54	44	14	0	40	1.46
479159--479196	2	19.0	2	94	0	67	47	0	2	50	1.15
479306--479331	2	13.0	2	100	0	52	50	0	0	50	1.00
482477--482515	19	2.1	19	85	4	53	43	5	7	43	1.55
483098--483126	15	1.9	15	100	0	58	44	0	6	48	1.29
483916--483961	22	2.1	22	100	0	92	39	13	34	13	1.83
485053--485372	159	2.0	158	93	2	543	40	4	10	45	1.59
486972--486999	2	14.0	2	100	0	56	50	0	50	0	1.00
487453--487484	11	2.8	11	95	4	55	68	3	0	28	1.04
489067--489093	2	13.5	2	100	0	54	48	0	0	51	1.00
492953--492994	21	2.0	21	100	0	84	47	4	14	33	1.65
688157--688190	2	17.0	2	87	0	50	44	0	5	50	1.26
688157--688190	10	3.4	10	95	0	59	44	0	5	50	1.26
688339--688368	13	2.3	13	94	0	51	30	3	0	66	1.07
692314--692381	22	3.2	21	78	17	70	60	2	1	35	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692814--692852	15	2.6	15	87	0	51	41	17	41	0	1.50
695851--695881	16	1.9	16	100	0	62	22	0	19	58	1.40
696353--696390	19	2.0	20	89	5	60	42	0	0	57	0.98
696353--696394	20	2.1	20	86	8	59	42	0	0	57	0.99
696346--696403	25	2.3	25	80	11	64	41	0	0	58	0.98
699987--700051	17	4.5	14	75	17	53	61	0	0	38	0.96
710395--710423	2	14.5	2	100	0	58	51	0	48	0	1.00
710768--710860	9	10.3	9	68	17	59	56	0	1	41	1.06
711035--711131	34	2.9	32	75	11	88	41	0	1	57	1.05
711052--711127	25	3.0	25	72	18	75	40	0	0	59	0.98
711038--711131	18	5.5	17	69	17	61	41	0	1	57	1.06
711052--711153	24	4.2	25	72	18	65	42	0	0	57	0.98
711143--711186	21	2.2	20	84	12	54	40	2	0	56	1.11
713169--713223	21	2.4	23	85	8	69	36	0	0	63	0.95
713169--713227	22	2.6	24	81	13	79	37	0	0	62	0.95
713188--713281	35	2.7	33	73	11	89	38	0	0	61	0.96
713211--713271	27	2.4	26	79	17	74	27	0	0	72	0.85
713428--713481	15	3.9	14	70	20	51	59	1	0	38	1.08
715200--715257	29	2.0	29	90	3	91	32	8	6	51	1.59
720190--720239	19	2.7	20	78	12	61	40	6	6	48	1.52
720269--720382	49	2.4	49	80	11	121	50	0	2	45	1.21
720397--720442	21	2.2	21	81	14	51	39	0	4	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720665--720760	47	2.0	50	80	13	112	47	2	0	50	1.12
725380--725464	41	2.1	41	97	0	161	36	9	9	44	1.69
726016--726053	18	2.1	18	85	9	51	39	0	0	60	0.97
726699--726739	20	1.9	23	85	14	61	53	0	2	43	1.13
726770--726814	20	2.3	20	84	3	56	26	0	8	64	1.23
727673--727739	31	2.2	31	86	5	91	62	4	1	31	1.24
727668--727720	16	3.3	16	73	7	54	60	1	1	35	1.19
734928--734966	18	2.2	19	90	9	64	38	2	0	58	1.12
735080--735108	2	14.5	2	100	0	58	51	0	0	48	1.00
737767--737798	2	16.0	2	100	0	64	50	0	50	0	1.00

Tables:   1   2   3   4   5