genome.fa.s151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold151
Parameters: 2 7 7 80 10 50 1000
Length:  367700

Tables:   1   2   3   4   

This is table  1  of  4  ( 399 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42--97	5	12.0	5	85	14	84	78	0	0	21	0.75
29--98	9	7.7	9	88	7	106	75	0	0	24	0.80
95--137	16	2.8	15	74	19	52	55	0	0	44	0.99
99--177	17	4.9	17	70	22	62	55	0	0	44	0.99
72--182	50	2.3	47	74	17	111	62	0	0	37	0.96
118--168	20	2.5	21	84	6	61	54	0	0	45	0.99
101--179	19	3.8	20	68	22	54	58	0	0	41	0.98
338--384	24	1.9	25	91	4	78	48	0	0	51	1.00
390--430	21	2.0	21	85	0	55	43	2	0	53	1.13
5471--5559	43	2.1	43	97	0	169	17	23	17	40	1.91
7487--7518	14	2.3	14	100	0	64	53	6	6	34	1.51
10283--10312	6	5.2	6	92	8	53	46	0	0	53	1.00
10337--10388	19	2.8	19	83	16	74	53	0	0	46	1.00
10380--10454	27	2.8	27	72	7	64	61	0	0	38	0.96
23190--23230	18	2.3	18	87	8	57	51	0	0	48	1.00
23484--23527	11	4.1	11	82	5	63	40	0	0	59	0.98
23492--23549	16	3.9	16	69	26	56	39	0	1	58	1.08
23484--23580	27	3.6	27	73	15	94	42	0	2	55	1.11
23593--23637	19	2.4	19	82	17	58	35	0	0	64	0.94
23590--23639	18	2.8	18	87	9	75	38	0	0	62	0.96
24139--24223	5	18.2	5	78	16	85	56	0	2	41	1.12
24139--24223	9	9.1	10	77	18	85	56	0	2	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24139--24223	24	3.7	24	80	13	81	56	0	2	41	1.12
24817--24848	13	2.5	13	94	0	55	53	15	0	31	1.43
25586--25628	21	1.9	23	86	13	63	74	4	2	18	1.10
31610--31655	24	2.0	24	91	4	76	43	2	4	50	1.34
31993--32023	2	15.5	2	100	0	62	51	0	48	0	1.00
32433--32472	19	2.0	20	90	4	64	75	2	0	22	0.93
40247--40301	28	2.0	28	88	0	83	20	14	18	47	1.83
40306--40368	24	2.6	24	80	5	74	31	4	19	44	1.71
41445--41470	2	13.0	2	100	0	52	50	0	0	50	1.00
44407--44454	21	2.3	21	89	3	71	43	16	14	25	1.86
45308--45436	52	2.5	52	93	2	224	29	17	17	35	1.93
45514--45599	32	2.7	32	90	0	136	37	13	13	34	1.85
45573--45597	13	1.9	13	100	0	50	32	8	16	44	1.76
46314--46339	13	2.0	13	100	0	52	38	0	0	61	0.96
46303--46359	15	3.9	14	77	13	53	38	0	0	61	0.96
46953--46998	17	2.8	17	86	3	67	58	0	0	41	0.98
47563--47664	23	4.5	24	71	18	83	45	0	1	52	1.12
47550--47664	47	2.6	45	83	8	137	42	0	1	55	1.10
47584--47673	25	3.7	25	77	10	105	44	0	1	54	1.07
47584--47678	23	4.0	22	72	13	73	45	0	1	53	1.07
48471--48519	23	2.1	23	85	7	64	44	2	4	48	1.33
48736--48787	26	2.0	25	88	3	77	48	3	0	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48756--48793	19	2.1	19	95	5	69	50	2	0	47	1.15
48893--48944	12	4.5	12	76	23	58	46	0	0	53	1.00
52372--52427	28	2.0	28	96	0	103	26	8	28	35	1.87
52928--52964	2	18.5	2	100	0	74	48	0	0	51	1.00
60395--60428	17	2.0	17	100	0	68	41	17	5	35	1.74
61031--61066	2	18.0	2	100	0	72	50	0	0	50	1.00
64016--64045	6	4.8	6	95	4	51	36	0	0	63	0.95
64016--64047	12	2.5	13	90	10	57	37	0	0	62	0.95
66826--66863	18	2.1	19	85	5	51	42	5	0	52	1.24
68170--68237	33	2.1	33	91	5	111	50	5	0	44	1.26
71541--71581	19	2.1	20	86	4	57	43	0	4	51	1.23
71986--72072	20	4.2	20	76	14	63	62	0	1	36	1.03
71968--72066	15	6.3	15	68	16	58	63	1	1	34	1.08
71966--72080	41	2.9	40	71	17	98	60	0	0	37	1.09
72528--72555	14	2.0	14	100	0	56	42	7	0	50	1.30
72534--72576	14	3.2	13	80	9	50	51	2	0	46	1.13
72534--72586	28	2.0	26	85	7	63	52	1	0	45	1.11
73546--73601	25	2.3	25	81	3	60	39	5	0	55	1.23
73568--73612	22	2.1	22	88	12	67	42	2	0	55	1.12
74453--74483	2	15.5	2	100	0	62	48	0	0	51	1.00
74942--74992	25	2.1	25	85	3	68	60	0	0	39	0.97
74937--74976	16	2.5	17	84	12	57	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75247--75294	20	2.4	19	83	10	60	39	0	0	60	0.97
75261--75370	49	2.2	51	80	13	124	46	0	0	52	1.06
75796--75867	32	2.2	33	83	9	87	38	1	1	58	1.15
75888--75937	15	3.2	15	75	10	55	38	0	4	58	1.17
75886--75943	17	3.5	17	76	9	66	36	0	3	60	1.14
75882--75943	32	1.9	32	93	0	106	35	0	4	59	1.19
77166--77207	21	2.0	20	86	4	57	40	0	0	59	0.97
77266--77321	29	1.9	29	85	7	78	39	0	1	58	1.08
77283--77321	15	2.7	14	88	7	60	43	0	2	53	1.14
77704--77743	6	7.0	6	86	13	50	30	0	2	67	1.04
77705--77734	11	2.7	11	94	0	51	30	0	0	70	0.88
79118--79159	15	2.8	16	79	20	54	40	0	0	59	0.97
79205--79234	16	1.9	16	93	6	53	46	0	3	50	1.18
80288--80318	16	2.0	15	93	6	53	51	0	0	48	1.00
82037--82084	2	24.0	2	100	0	96	50	0	0	50	1.00
85242--85266	3	8.3	3	100	0	50	68	0	0	32	0.90
85798--85841	20	2.1	21	83	8	54	20	6	2	70	1.21
85861--85925	18	3.7	18	78	15	64	23	1	4	70	1.14
85850--85925	25	3.0	24	77	12	71	25	1	3	69	1.13
85859--85926	26	2.6	27	76	9	77	23	1	4	70	1.13
87291--87329	21	2.0	21	90	10	64	23	20	7	48	1.75
90158--90186	2	14.5	2	100	0	58	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90961--91000	21	1.9	21	94	0	71	42	0	0	57	0.98
92453--92518	6	11.3	6	72	15	50	31	1	0	66	1.01
92423--92527	38	2.7	38	78	8	104	32	0	0	66	0.98
92440--92489	17	3.1	17	77	5	59	24	2	0	74	0.93
92451--92529	23	3.4	24	81	10	83	30	1	0	68	0.98
92423--92520	11	9.7	11	70	18	54	33	1	0	65	1.00
93270--93326	24	2.4	24	97	2	107	35	7	3	54	1.45
99137--99161	13	1.9	13	100	0	50	16	0	4	80	0.87
99158--99195	18	2.1	19	85	5	51	44	0	0	55	0.99
99233--99282	22	2.2	22	82	7	55	32	0	4	64	1.12
102138--102185	21	2.2	22	81	3	62	43	0	4	52	1.20
102200--102231	3	10.7	3	100	0	64	65	0	0	34	0.93
102317--102344	2	14.0	2	100	0	56	50	0	0	50	1.00
114771--114796	12	2.2	12	100	0	52	15	38	7	38	1.76
116446--116519	23	3.1	21	70	26	51	59	2	1	36	1.20
117136--117208	35	2.1	34	87	9	105	42	0	0	57	0.98
118156--118196	2	20.5	2	100	0	82	48	0	0	51	1.00
120930--120970	12	3.4	12	86	0	55	39	0	2	58	1.11
120938--120966	15	1.9	15	100	0	58	44	0	0	55	0.99
121805--121842	2	19.5	2	83	5	51	52	2	0	44	1.14
125472--125507	2	17.5	2	88	5	54	44	5	0	50	1.25
128300--128329	15	2.0	15	93	0	51	76	0	10	13	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128349--128391	19	2.2	20	84	12	63	79	6	4	9	1.06
128448--128602	26	6.0	24	70	22	93	81	5	6	7	0.99
128448--128812	27	13.0	26	70	18	166	80	5	5	9	1.03
128668--128822	42	3.8	40	71	17	131	81	3	4	9	0.94
128482--128812	1	331.0	1	63	0	86	80	4	5	9	1.00
128866--128981	13	8.6	13	73	20	71	81	10	0	7	0.93
128902--128972	1	71.0	1	77	0	70	88	7	0	4	0.62
128902--128969	10	6.9	10	84	5	86	88	7	0	4	0.63
128959--129044	33	2.7	31	78	12	86	72	23	0	4	1.04
128908--128984	34	2.2	33	86	9	100	85	11	0	2	0.69

Tables:   1   2   3   4