genome.fa.s157.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold157
Parameters: 2 7 7 80 10 50 1000
Length:  491920

Tables:   1   2   3   

This is table  3  of  3  ( 336 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369728--369800	21	3.7	21	83	10	100	34	20	9	35	1.85
370393--370511	42	2.8	42	89	0	175	7	45	3	43	1.49
370426--370501	12	6.9	11	75	15	52	9	48	2	39	1.49
375903--376072	52	3.3	51	80	2	196	31	12	25	30	1.92
376055--376153	28	3.5	28	88	0	144	24	18	34	23	1.96
376143--376479	52	6.4	51	71	14	184	30	12	26	29	1.93
376137--376479	104	3.3	103	71	13	293	31	12	26	29	1.93
375839--376370	239	2.2	240	91	2	856	29	14	28	27	1.95
376295--376370	27	2.8	28	89	2	109	21	21	34	23	1.97
376083--376479	212	1.9	212	90	2	636	29	13	27	28	1.94
376358--376476	51	2.3	53	85	7	154	33	11	22	31	1.90
378850--378875	13	2.0	13	100	0	52	38	15	15	30	1.88
378829--378895	33	2.0	33	88	0	98	43	16	14	25	1.86
378915--378982	19	3.9	18	76	23	83	38	14	11	35	1.83
378937--378961	13	1.9	13	100	0	50	32	16	16	36	1.90
378918--378980	32	2.0	32	96	0	117	36	15	12	34	1.86
379018--379094	21	3.7	21	91	0	127	37	19	9	33	1.83
380964--381219	50	5.1	50	84	1	316	29	18	18	33	1.95
380964--381222	100	2.6	100	86	1	349	30	18	18	32	1.95
381433--381466	17	2.0	17	88	0	50	47	11	5	35	1.65
385475--385520	24	1.9	24	90	0	74	60	2	2	34	1.21
385492--385770	53	5.3	53	82	7	320	53	4	1	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385492--385770	107	2.6	105	84	5	334	53	4	1	40	1.31
385679--385934	122	2.1	120	82	9	304	52	4	1	41	1.30
386106--386148	22	2.0	22	86	9	61	46	4	11	37	1.61
386501--386551	22	2.3	22	86	0	66	50	5	1	41	1.37
386637--386950	52	6.1	51	78	13	292	43	1	5	49	1.33
386643--386950	153	2.0	153	82	9	380	43	1	5	49	1.34
386769--386876	53	2.0	55	83	7	132	42	1	5	50	1.36
388236--388261	10	2.6	10	100	0	52	50	7	0	42	1.31
389101--389230	13	7.7	19	67	30	89	36	11	17	34	1.86
389102--389235	32	4.1	33	95	0	218	36	11	17	34	1.86
389102--389263	65	2.5	65	84	7	168	37	12	17	32	1.88
389273--389297	13	1.9	13	100	0	50	32	16	16	36	1.90
389187--389370	86	2.2	85	83	8	223	34	16	16	32	1.92
389286--389434	52	2.9	50	88	6	208	33	15	18	32	1.92
403291--403345	18	3.2	17	80	7	67	87	10	1	0	0.63
403292--403345	11	4.6	11	84	11	72	87	11	1	0	0.63
403291--403345	27	2.0	27	89	6	85	87	10	1	0	0.63
404787--404851	28	2.3	28	77	17	71	27	30	20	21	1.98
404856--404995	34	4.2	33	79	7	147	17	32	11	38	1.85
404823--404990	68	2.4	68	83	5	194	19	32	11	36	1.88
404963--405042	27	2.9	27	84	3	97	23	31	18	26	1.98
405078--405884	43	17.1	48	80	10	775	25	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405083--405884	92	8.6	92	84	6	970	25	25	17	30	1.97
405433--405543	21	5.2	21	61	20	50	27	27	18	27	1.98
405684--405818	52	2.9	43	75	17	135	22	25	19	31	1.98
405726--405875	52	2.9	52	91	0	237	22	24	18	35	1.95
406717--406817	32	3.1	32	91	4	159	36	11	17	33	1.87
406716--406812	19	5.8	17	70	27	66	36	12	17	34	1.87
406769--406793	13	1.9	13	100	0	50	36	16	16	32	1.90
406849--407003	52	3.0	50	87	5	211	34	18	16	30	1.94
414913--414967	20	2.8	20	88	5	76	40	12	14	32	1.84
414997--415059	19	3.6	19	74	24	75	36	19	11	33	1.87
414984--415061	32	2.4	32	95	0	138	34	17	12	34	1.88
415016--415040	13	1.9	13	100	0	50	32	16	16	36	1.90
415779--416118	49	7.2	49	75	13	311	32	17	26	23	1.96
415878--416118	92	2.7	90	91	2	378	33	17	24	24	1.96
416153--416394	87	2.8	86	88	2	344	19	17	30	32	1.95
416173--416404	57	4.0	58	89	3	292	21	17	31	30	1.96
417821--417885	24	2.7	24	86	11	80	1	3	12	83	0.84
417821--417885	22	2.8	22	83	9	67	1	3	12	83	0.84
417821--417885	12	5.3	12	73	10	60	1	3	12	83	0.84
431894--431953	13	4.2	13	73	22	57	36	16	13	33	1.88
431870--432032	32	5.1	32	91	0	265	36	15	12	34	1.85
431991--432015	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431908--432056	19	8.7	19	66	27	75	36	15	11	36	1.83
433534--434427	464	1.9	460	82	4	1120	30	18	13	37	1.89
436610--437515	464	2.0	465	86	2	1275	31	18	12	36	1.89
437656--439311	767	2.2	761	83	4	2043	31	17	13	36	1.90
438843--440275	475	3.0	470	84	3	1727	31	18	13	36	1.89
443752--443820	33	2.1	32	86	10	95	31	11	17	39	1.85
450085--450123	21	1.9	21	89	5	62	33	23	0	43	1.54
452478--452514	19	1.9	19	100	0	74	32	16	16	35	1.91
452542--452595	20	2.7	20	91	5	83	31	12	18	37	1.89
453577--462362	476	18.7	473	81	5	9275	31	18	13	36	1.89
456963--462362	475	11.4	475	81	4	5867	31	18	13	36	1.89
463984--464059	12	6.9	11	75	15	52	39	2	48	9	1.49
463983--464068	24	3.8	24	72	17	85	41	2	45	10	1.51
463974--464092	42	2.8	42	90	0	184	43	2	45	8	1.47
469339--469377	21	1.9	21	89	5	62	33	23	0	43	1.54
471732--471768	19	1.9	19	100	0	74	32	16	16	35	1.91
471796--471849	20	2.7	20	91	5	83	31	12	18	37	1.89
472831--474625	474	3.8	466	81	6	1971	31	17	13	37	1.89
477764--477816	19	2.7	21	88	8	76	26	15	16	41	1.88
477866--477921	20	2.8	21	86	8	80	35	12	17	33	1.88
477782--477982	83	2.4	84	90	1	316	33	19	14	32	1.92
477964--477995	13	2.5	13	94	0	55	34	18	9	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478498--478522	9	2.8	9	100	0	50	24	0	32	44	1.54
479611--479654	9	4.9	9	89	10	72	43	0	25	31	1.55
483623--483732	42	2.6	42	91	0	184	40	2	47	10	1.51
488151--488268	51	2.3	50	81	7	148	31	11	25	32	1.90
488279--488396	51	2.3	51	91	0	191	28	12	30	27	1.93
488330--488537	79	2.6	78	84	6	274	33	11	25	28	1.91
488150--488477	130	2.5	130	85	2	462	32	11	26	29	1.91
490919--490943	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3

The End!