genome.fa.s159.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold159
Parameters: 2 7 7 80 10 50 1000
Length:  552906

Tables:   1   2   3   4   

This is table  3  of  4  ( 458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247742--247780	20	2.0	20	89	0	60	46	0	12	41	1.42
248167--248241	32	2.4	31	84	2	87	44	6	2	46	1.43
248172--248244	31	2.3	32	85	2	94	46	6	2	43	1.44
248528--248593	7	9.1	7	79	9	62	50	1	0	48	1.10
248528--248592	15	4.4	15	80	1	78	49	1	0	49	1.10
251633--251682	13	3.6	13	75	15	55	58	14	8	20	1.61
252776--252831	23	2.5	24	80	8	64	53	0	1	44	1.11
252811--252877	17	3.7	19	78	11	77	43	0	0	56	0.99
252848--252943	47	2.0	47	95	0	174	44	8	2	44	1.45
256293--256337	21	2.1	21	84	8	56	53	4	20	22	1.63
258135--258165	15	2.1	15	93	0	53	48	16	22	12	1.80
260248--260285	13	2.9	13	96	0	67	34	15	15	34	1.90
262180--262205	13	2.0	13	100	0	52	38	15	15	30	1.88
264026--264726	51	14.0	50	69	13	221	25	19	20	33	1.97
264435--264726	154	1.9	154	82	4	365	23	18	22	34	1.96
264435--264755	51	6.3	50	75	7	243	24	19	22	33	1.97
264432--264768	103	3.3	102	77	6	340	24	18	23	33	1.97
265817--265868	16	3.2	16	77	0	50	25	15	36	23	1.93
265876--265937	16	3.9	16	78	2	63	37	6	25	30	1.81
265941--266097	80	2.0	79	82	6	192	35	10	28	24	1.89
266074--266124	16	3.2	16	80	0	57	39	13	27	19	1.90
266208--266237	10	3.0	10	95	0	51	40	16	23	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267126--267155	13	2.3	13	94	0	51	33	20	10	36	1.86
267141--267195	20	2.8	20	88	0	74	34	10	21	32	1.89
271042--271106	32	2.0	32	93	0	112	24	21	12	41	1.87
271142--271194	20	2.7	20	87	0	79	35	11	13	39	1.80
271559--271645	36	2.5	36	83	7	110	28	13	27	29	1.94
274560--274622	20	3.5	20	66	28	59	26	15	15	41	1.88
274559--274623	33	2.0	33	100	0	130	27	15	15	41	1.87
277228--277252	13	1.9	13	100	0	50	24	16	20	40	1.91
277209--277271	33	1.9	32	87	3	90	26	15	15	41	1.88
277433--277551	58	2.1	58	100	0	238	42	21	21	15	1.89
278904--278947	24	1.9	24	86	9	65	9	9	4	77	1.12
278890--278954	24	2.8	24	76	6	62	9	12	6	72	1.28
281845--281869	13	1.9	13	100	0	50	36	16	16	32	1.90
281859--281913	20	2.8	19	88	5	74	27	12	16	43	1.84
284035--284086	13	4.5	13	73	26	62	32	13	17	36	1.89
284018--284086	33	2.1	32	89	10	104	30	14	18	36	1.91
291261--291316	25	2.2	25	81	9	60	71	0	26	1	0.96
296893--296991	15	5.7	20	64	30	73	37	18	9	35	1.82
296912--297004	13	8.2	12	69	23	58	36	18	9	35	1.84
296894--297006	33	3.4	33	100	0	226	36	17	9	36	1.83
296894--297024	33	4.0	32	95	4	201	35	18	11	35	1.87
297054--297109	19	2.9	19	89	2	76	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297226--297279	22	2.5	22	79	8	58	42	9	7	40	1.65
297681--297829	30	4.8	29	72	18	102	33	21	5	39	1.76
298574--298599	13	2.0	13	100	0	52	38	7	15	38	1.76
298624--298678	20	2.8	20	85	0	65	30	12	12	43	1.80
300882--300952	27	2.6	27	93	0	115	25	42	18	14	1.87
303282--303308	13	2.1	13	100	0	54	40	14	14	29	1.86
309567--309593	13	2.1	13	100	0	54	40	14	14	29	1.86
309579--309631	20	2.7	20	88	5	72	41	16	13	28	1.86
312842--312872	15	2.1	15	93	0	53	35	16	12	35	1.87
313589--313647	30	2.0	30	83	12	77	25	18	11	44	1.84
313854--314028	44	4.0	44	70	4	145	20	24	15	40	1.91
313823--314147	133	2.5	132	82	4	361	21	23	14	40	1.90
314230--314344	44	2.6	44	84	2	142	21	27	15	34	1.94
314150--314345	89	2.2	88	81	0	221	22	26	14	36	1.93
314280--314453	75	2.3	75	86	3	233	23	25	14	36	1.93
314841--315065	83	2.7	85	78	4	233	17	26	13	42	1.86
322496--322547	21	2.5	21	75	9	54	40	15	15	28	1.88
322596--322621	13	2.0	13	100	0	52	38	15	15	30	1.88
322578--322641	33	2.0	32	90	3	101	39	20	14	26	1.90
324526--324999	239	2.0	238	99	0	939	44	11	13	30	1.78
325058--325095	14	2.7	14	100	0	76	63	0	13	23	1.30
329040--329078	13	3.0	13	96	0	69	30	15	17	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329521--329565	20	2.1	22	92	8	76	20	48	26	4	1.68
331542--331566	13	1.9	13	100	0	50	32	16	16	36	1.90
338972--339019	15	2.9	16	81	15	53	72	8	12	6	1.26
338953--339036	38	2.2	38	80	6	98	72	9	11	5	1.27
340324--340380	30	1.9	30	85	7	80	26	28	14	31	1.94
340361--340545	27	6.7	27	85	4	230	25	32	15	26	1.95
340361--340545	54	3.4	54	86	8	266	25	32	15	26	1.95
340361--340566	84	2.5	82	84	4	261	27	32	14	26	1.94
340556--341216	28	22.8	28	85	6	653	29	29	18	22	1.97
340547--341214	257	2.5	263	84	3	866	29	29	17	22	1.97
341817--341892	20	3.8	20	85	0	107	35	13	11	39	1.81
346005--346061	19	2.9	19	86	2	78	31	17	17	33	1.93
346093--346155	33	1.9	33	84	12	85	39	11	15	33	1.83
349967--350172	78	2.6	78	81	2	225	28	16	30	24	1.97
350124--350195	28	2.6	28	86	0	90	23	20	34	20	1.96
350205--350407	55	3.8	53	79	7	180	35	11	23	29	1.90
350390--350465	27	2.8	28	89	2	109	21	21	34	23	1.97
350073--350573	266	1.9	266	90	1	808	31	13	26	28	1.94
350183--350571	51	7.4	51	70	14	209	32	12	25	29	1.92
352931--352956	13	2.0	13	100	0	52	38	15	15	30	1.88
352910--352976	33	2.0	33	88	0	98	43	16	14	25	1.86
352999--353061	32	2.0	32	93	0	108	36	15	11	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352996--353063	19	3.9	19	74	21	76	38	14	10	36	1.81
353833--354704	55	15.9	55	93	2	1461	22	20	29	28	1.98
354043--354125	27	3.0	27	60	16	62	21	19	30	28	1.98
354318--354400	27	3.0	27	60	16	62	21	19	30	28	1.98
354535--354675	27	5.1	27	59	16	65	21	19	30	28	1.98
355699--355776	36	2.1	37	81	6	88	0	14	7	78	0.96
372561--372760	79	2.6	78	83	3	233	30	17	27	24	1.97
372718--372788	28	2.5	29	86	8	94	26	19	29	23	1.98
372772--373162	51	7.4	51	70	14	184	32	11	24	30	1.91
372793--372956	55	3.0	55	84	5	183	38	10	22	28	1.87
372661--373161	266	1.9	266	89	3	776	32	13	25	28	1.93
375587--375649	32	2.0	32	93	0	108	36	15	11	36	1.84
375584--375651	19	3.9	19	74	21	76	38	14	10	36	1.81
379339--379378	21	2.0	21	85	5	55	30	20	2	47	1.63
393588--393795	78	2.7	78	84	0	245	31	27	14	26	1.95
394406--394628	42	5.3	42	74	5	137	20	27	18	33	1.96
394676--394761	42	2.0	42	82	8	104	18	30	12	38	1.88
396068--396489	164	2.6	161	84	7	509	27	10	9	53	1.65
405980--406020	18	2.2	19	91	4	66	14	2	0	82	0.76
406604--406654	25	2.0	25	100	0	102	15	23	27	33	1.95
411542--411583	15	2.9	14	86	13	59	64	0	0	35	0.94
412851--412888	20	2.0	19	85	10	51	31	0	7	60	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415569--415616	14	3.4	14	80	13	53	25	0	2	72	0.95
415560--415610	23	2.1	25	79	17	63	25	0	1	72	0.95
416332--416385	27	1.9	27	85	14	74	62	3	1	31	1.23
419039--419104	16	4.1	16	75	9	53	15	16	28	39	1.89
419039--419094	16	3.4	17	74	18	55	14	16	28	41	1.87
419897--419964	16	4.2	16	81	7	84	11	16	30	41	1.84
419897--419964	32	2.1	32	88	0	100	11	16	30	41	1.84
420708--420761	2	27.5	2	92	3	92	51	1	0	46	1.11
421152--421196	20	2.2	20	92	0	72	48	0	13	37	1.42
421591--421666	32	2.4	32	88	0	107	39	9	7	43	1.66

Tables:   1   2   3   4