genome.fa.s159.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold159
Parameters: 2 7 7 80 10 50 1000
Length:  552906

Tables:   1   2   3   4   

This is table  4  of  4  ( 458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422032--422105	21	3.5	21	92	0	121	28	14	20	36	1.92
423506--423531	13	2.0	13	100	0	52	30	15	15	38	1.88
423592--423664	20	3.6	20	77	3	92	31	17	13	36	1.89
423570--423664	41	2.3	42	98	1	183	29	16	12	41	1.86
426102--426140	13	3.0	13	96	0	69	35	15	17	30	1.91
426126--426204	20	3.7	20	75	18	70	45	15	13	25	1.83
428212--428249	15	2.5	15	91	0	58	13	21	15	50	1.78
432311--432336	13	2.0	13	100	0	52	30	15	15	38	1.88
432397--432469	20	3.6	20	77	3	92	31	17	13	36	1.89
432375--432469	41	2.3	42	98	1	183	29	16	12	41	1.86
432764--432873	34	3.3	34	83	6	127	38	11	24	25	1.89
435434--435473	21	2.0	21	90	5	64	20	0	22	57	1.41
437254--437305	21	2.5	20	81	9	61	38	13	13	34	1.84
437736--437828	34	2.7	34	80	8	100	41	9	17	31	1.81
437777--437870	34	2.6	36	80	8	84	41	8	20	29	1.82
438298--438331	13	2.6	14	81	18	54	47	5	0	47	1.26
441144--441283	69	2.0	69	94	0	244	41	9	15	33	1.79
441564--441679	56	2.1	56	95	0	205	50	14	17	18	1.79
442445--442500	24	2.4	24	85	5	71	55	0	1	42	1.10
444255--444292	20	2.0	19	85	10	51	31	0	7	60	1.25
444525--444566	21	2.0	21	95	0	75	35	19	11	33	1.88
445741--445864	52	2.4	52	97	0	230	28	14	12	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448134--448315	95	1.9	97	86	4	262	37	13	20	28	1.91
449741--449805	32	2.0	32	87	6	94	46	13	12	27	1.79
453852--453882	15	2.1	15	93	0	53	48	16	22	12	1.80
455965--456028	13	4.9	13	92	0	101	34	17	15	32	1.91
455965--456028	26	2.5	26	97	0	119	34	17	15	32	1.91
456140--456185	21	2.2	20	81	11	58	32	19	4	43	1.71
457839--457885	19	2.4	20	92	7	87	42	0	29	27	1.56
458545--458606	32	2.0	31	93	3	106	41	14	12	30	1.83
458539--458606	18	4.0	18	73	21	74	42	16	11	29	1.83
459398--459577	89	2.0	89	93	0	306	40	15	16	28	1.88
465014--465072	5	11.2	5	76	16	57	23	5	0	71	1.06
465014--465072	11	5.6	10	77	15	57	23	5	0	71	1.06
472878--472903	13	2.0	13	100	0	52	38	15	15	30	1.88
475130--475174	21	2.1	21	84	8	56	53	4	20	22	1.63
476978--477016	15	2.6	15	91	0	60	51	15	20	12	1.76
479077--479115	13	3.0	13	96	0	69	30	12	15	41	1.85
484694--484734	21	2.0	21	85	9	57	41	12	7	39	1.70
484767--484826	20	3.0	21	82	9	79	40	15	15	30	1.87
484814--484950	53	2.6	53	95	1	238	37	17	17	27	1.92
484996--485047	21	2.4	22	93	6	97	26	23	11	38	1.89
485137--485162	13	2.0	13	100	0	52	30	15	23	30	1.95
488333--488389	20	2.8	20	87	7	80	29	21	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488414--488467	19	2.8	19	80	2	63	38	14	14	31	1.87
489440--489537	36	2.9	35	83	8	125	29	27	12	30	1.93
489986--490079	22	4.3	22	85	5	109	39	12	18	29	1.88
489986--490083	44	2.2	44	85	3	126	39	13	17	29	1.87
490134--490198	33	2.0	32	88	8	96	43	10	13	32	1.79
494829--494919	35	2.8	31	77	11	94	31	21	13	32	1.92
495436--495503	19	3.5	19	85	2	82	44	14	10	30	1.79
495826--495850	13	1.9	13	100	0	50	36	16	16	32	1.90
495913--495937	13	1.9	13	100	0	50	32	16	16	36	1.90
495946--496066	52	2.3	52	97	0	224	34	18	18	28	1.94
504316--504464	31	4.8	31	85	8	180	24	29	17	28	1.97
504418--505011	33	17.6	34	86	7	759	19	34	12	33	1.89
504413--505011	133	4.5	135	88	6	785	19	34	12	33	1.89
505015--505152	33	4.2	33	87	6	208	28	34	16	19	1.94
505013--505152	67	2.1	66	90	5	221	29	35	16	19	1.93
505152--506084	49	19.7	49	85	8	1258	24	26	18	30	1.98
505147--506093	92	10.1	92	94	2	1475	24	26	18	30	1.98
505994--506114	52	2.3	55	84	4	167	25	25	14	34	1.93
506097--506223	67	1.9	68	85	1	175	23	25	13	37	1.91
507034--507058	13	1.9	13	100	0	50	36	16	16	32	1.90
507121--507145	13	1.9	13	100	0	50	32	16	16	36	1.90
507154--507274	52	2.3	52	97	0	224	34	18	18	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515526--515674	31	4.8	31	85	8	180	24	29	17	28	1.97
515628--516221	33	17.6	34	86	7	759	19	34	12	33	1.89
515623--516221	133	4.5	135	88	6	785	19	34	12	33	1.89
516225--516362	33	4.2	33	87	6	208	28	34	16	19	1.94
516223--516362	67	2.1	66	90	5	221	29	35	16	19	1.93
516362--517293	49	19.7	49	85	8	1274	24	26	18	30	1.98
516357--517302	92	10.1	92	95	2	1491	24	26	18	30	1.98
517203--517323	52	2.3	55	84	4	167	25	25	14	34	1.93
517306--517432	67	1.9	68	85	1	175	23	25	13	37	1.91
518243--518267	13	1.9	13	100	0	50	36	16	16	32	1.90
518330--518354	13	1.9	13	100	0	50	32	16	16	36	1.90
518363--518483	52	2.3	52	97	0	224	34	18	18	28	1.94
525203--525241	21	1.9	20	84	5	51	51	15	10	23	1.73
526436--526482	13	3.5	13	72	16	51	40	23	0	36	1.55
526429--526483	27	2.0	27	100	0	110	43	21	0	34	1.53
527644--527690	18	2.6	18	89	0	67	34	29	17	19	1.94
528967--529007	20	2.0	20	86	9	57	39	19	9	31	1.84
532304--532329	13	2.0	13	100	0	52	30	15	15	38	1.88
532368--532443	21	3.7	21	80	3	100	28	17	11	42	1.84
532389--532461	20	3.6	20	81	3	101	31	19	13	35	1.91
532368--532461	41	2.3	41	98	0	179	29	18	12	39	1.88
534904--534968	13	5.0	13	94	0	112	35	15	18	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534904--534967	26	2.5	26	100	0	128	34	15	18	31	1.93
534954--535032	20	3.7	20	75	18	70	45	15	13	25	1.83
537048--537078	15	2.1	15	93	0	53	12	22	16	48	1.80
538882--538926	21	2.1	21	84	8	56	22	20	4	53	1.63
541137--541162	13	2.0	13	100	0	52	30	15	15	38	1.88
541201--541276	21	3.7	21	80	3	100	28	17	11	42	1.84
541222--541294	20	3.6	20	81	3	101	31	19	13	35	1.91
541201--541294	41	2.3	41	98	0	179	29	18	12	39	1.88
549371--549405	14	2.5	14	100	0	70	28	17	5	48	1.69
550160--550211	27	2.0	26	88	3	77	15	30	3	50	1.62

Tables:   1   2   3   4

The End!