genome.fa.s161.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold161
Parameters: 2 7 7 80 10 50 1000
Length:  434478

Tables:   1   2   3   4   

This is table  3  of  4  ( 422 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264263--264291	14	2.0	15	93	6	51	27	10	0	62	1.28
268846--268873	2	14.0	2	100	0	56	50	0	0	50	1.00
269799--269874	36	2.1	36	97	0	143	35	14	42	7	1.75
269965--270130	74	2.2	74	91	4	264	24	21	24	29	1.99
270590--270640	18	3.2	16	73	26	54	54	3	0	41	1.19
271299--271507	50	4.2	50	87	0	276	30	18	19	32	1.95
275880--276088	50	4.2	50	88	0	301	29	17	18	34	1.94
277488--277539	15	3.5	14	75	19	52	71	0	5	23	1.07
278412--278442	3	10.3	3	100	0	62	35	0	0	64	0.94
278637--278703	27	2.5	28	80	11	77	46	0	1	52	1.09
279288--279319	9	3.4	10	87	12	50	9	15	0	75	1.05
279370--279396	13	2.1	13	100	0	54	37	7	14	40	1.74
279968--280092	27	4.7	27	68	20	75	57	0	0	42	0.98
279993--280045	22	2.4	21	78	9	52	50	0	0	49	1.00
280018--280078	17	3.8	16	73	18	54	54	0	0	45	1.00
280385--280441	25	2.4	24	80	14	64	63	1	0	35	1.05
280426--280476	22	2.2	22	83	13	59	49	5	3	41	1.45
280504--280610	24	4.3	23	69	18	61	25	1	9	63	1.34
280477--280628	77	2.0	77	93	0	259	25	2	8	63	1.36
280496--280594	20	5.1	19	68	20	53	25	1	8	65	1.26
280606--280632	13	2.1	13	100	0	54	29	0	0	70	0.88
280845--280898	16	3.4	16	75	10	56	46	3	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280898--280938	20	2.0	21	85	4	57	65	0	0	34	0.93
281227--281296	21	3.5	20	77	9	72	41	0	2	55	1.14
281192--281295	40	2.6	39	82	10	113	38	1	2	56	1.25
282247--282290	19	2.3	19	92	0	70	45	9	9	36	1.68
282367--282391	13	1.9	13	100	0	50	60	16	0	24	1.36
282454--282500	19	2.5	18	86	6	58	40	2	2	55	1.24
282655--282692	19	1.9	19	89	5	58	26	18	26	28	1.98
283244--283328	32	2.6	32	75	18	86	42	1	4	51	1.30
284098--284131	3	11.0	3	93	6	59	32	0	0	67	0.91
284167--284221	8	6.2	9	78	17	53	63	0	1	34	1.05
284173--284240	32	2.1	32	81	10	77	58	0	4	36	1.18
290505--290564	29	2.1	29	80	0	66	10	15	5	70	1.32
292847--292890	3	15.0	3	95	4	81	34	0	0	65	0.93
293243--293282	20	2.0	20	90	0	62	40	0	0	60	0.97
294192--294222	2	15.5	2	100	0	62	48	0	0	51	1.00
296141--296179	13	3.0	13	85	10	53	53	0	5	41	1.23
296136--296177	13	3.1	14	83	10	52	54	0	4	40	1.21
297159--297187	2	15.0	2	92	7	51	48	0	0	51	1.00
298410--298484	27	2.8	27	85	0	105	45	22	8	24	1.79
302937--303028	27	3.6	24	72	13	76	45	18	6	29	1.74
302954--303028	27	2.8	27	85	0	105	46	21	5	26	1.72
305784--306033	123	2.0	123	98	0	482	35	12	12	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306937--307017	41	2.0	42	87	2	119	43	3	18	34	1.68
309134--309160	4	6.8	4	100	0	54	77	0	0	22	0.76
309676--310198	201	2.6	199	86	4	712	42	10	9	37	1.73
310203--310236	2	17.5	2	93	6	61	50	0	0	50	1.00
311225--311294	12	6.3	11	73	20	56	44	1	1	52	1.18
312352--312379	14	2.0	14	100	0	56	42	0	0	57	0.99
313025--313065	20	2.1	20	86	4	57	51	2	0	46	1.14
315648--315705	28	2.1	28	87	6	82	44	0	0	55	0.99
315657--315708	18	2.9	18	85	0	68	42	0	0	57	0.98
317423--317467	14	3.4	14	80	20	60	53	0	0	46	1.00
317423--317467	13	3.4	12	85	14	54	53	0	0	46	1.00
317795--317868	35	2.1	35	100	0	148	36	5	17	40	1.73
318166--318205	21	1.9	21	90	10	64	60	0	0	40	0.97
320195--320240	22	2.0	24	91	8	78	69	0	0	30	0.89
323868--323899	2	16.0	2	100	0	64	50	0	0	50	1.00
328154--328178	13	1.9	13	100	0	50	36	16	16	32	1.90
328134--328200	33	2.0	33	88	0	98	32	11	14	40	1.83
328241--328265	13	1.9	13	100	0	50	32	16	16	36	1.90
331437--331535	20	4.8	20	83	9	101	40	10	12	37	1.76
336002--336045	21	2.0	23	86	8	65	70	0	0	29	0.88
338376--338418	21	2.1	20	82	4	50	44	0	0	55	0.99
338462--338513	21	2.4	21	75	12	52	51	1	1	44	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338931--338963	15	2.1	16	88	5	50	87	9	0	3	0.63
340963--341008	2	23.0	2	95	0	83	50	2	0	47	1.13
344191--344359	32	5.2	32	71	4	115	31	17	20	30	1.95
344124--344987	31	27.8	31	72	8	522	28	20	20	29	1.98
344295--344620	94	3.5	94	80	3	300	29	21	19	29	1.97
344124--348583	63	71.2	62	68	10	879	28	19	21	30	1.97
344998--348583	95	38.0	94	70	10	544	28	18	22	30	1.97
344990--346916	32	60.4	32	74	5	1171	27	18	22	30	1.97
345832--345910	40	2.0	40	85	5	106	24	18	24	32	1.97
346406--346612	102	2.0	103	82	4	249	25	16	21	36	1.94
347021--347080	31	1.9	31	86	0	84	31	21	21	25	1.98
347148--347209	30	2.0	31	84	3	81	33	24	19	22	1.97
347054--347309	31	8.4	31	70	11	145	30	21	18	29	1.97
347265--347358	49	1.9	49	82	0	116	28	23	18	29	1.97
347316--347681	32	11.6	31	76	7	128	28	19	22	29	1.98
347312--348157	127	6.7	125	75	7	566	28	18	22	31	1.97
347591--348286	32	21.7	31	70	12	241	28	17	22	31	1.97
347834--348039	93	2.2	95	81	6	231	27	15	22	34	1.94
348119--348196	40	2.0	40	87	5	113	26	17	21	33	1.96
348391--348583	32	6.1	32	77	7	169	30	16	21	31	1.96
348880--348907	13	2.2	13	100	0	56	39	17	14	28	1.89
352080--353077	32	31.5	32	71	7	552	27	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352080--353074	63	15.7	64	69	10	440	27	20	22	29	1.98
352367--357416	95	53.5	95	71	10	919	27	19	21	30	1.98
352740--353077	120	2.8	121	81	4	331	26	22	23	27	1.99
352936--353017	27	2.9	27	76	9	74	30	20	20	28	1.98
353080--353726	32	20.6	32	75	5	473	26	19	22	31	1.98
353085--353732	62	10.3	64	73	9	388	26	19	22	31	1.98
353979--354085	31	3.5	31	83	6	110	28	25	18	27	1.98
354058--354137	40	2.0	40	82	4	99	22	16	23	37	1.93
354099--354178	31	2.5	31	84	6	99	27	17	21	33	1.96
354295--360938	32	209.1	31	68	9	1324	28	19	21	30	1.98
354101--396762	63	667.9	63	69	10	13107	28	19	21	31	1.97
354352--354797	166	2.7	167	77	7	384	26	19	22	30	1.98
355024--355156	71	1.9	71	85	3	187	25	21	21	32	1.98
355094--396762	32	1313.8	30	67	13	4583	28	19	21	31	1.97
355665--356216	220	2.5	219	78	2	559	29	20	20	29	1.98
354583--359905	127	41.9	125	71	9	774	28	19	21	30	1.97
357673--357852	94	1.9	94	83	2	236	27	21	18	31	1.97
359004--359209	102	2.0	103	83	4	265	27	18	20	33	1.96
358914--359272	197	1.8	198	83	4	474	27	17	22	32	1.97
358836--359581	159	4.7	158	76	9	501	28	19	21	29	1.98
359525--359727	103	2.0	103	83	5	259	30	19	17	32	1.95
359883--360018	71	1.9	71	80	5	159	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360492--360997	95	5.3	93	71	12	271	27	18	22	31	1.97
361869--363082	95	12.8	93	70	11	382	27	18	22	30	1.97
362413--362635	94	2.4	94	80	8	240	27	21	19	30	1.98
362405--362692	125	2.3	125	81	8	318	26	21	20	31	1.98
362724--363145	95	4.4	96	75	8	344	28	17	22	31	1.96
363160--363184	8	3.1	8	100	0	50	0	12	36	52	1.39
363209--363499	158	1.8	158	82	4	372	26	19	22	31	1.98
364034--396560	95	340.5	94	69	12	5490	28	19	21	31	1.97
364067--364424	125	2.8	125	79	7	318	28	19	21	30	1.97
365802--365920	31	3.8	31	76	6	114	29	20	18	31	1.96

Tables:   1   2   3   4