Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold161
Parameters: 2 7 7 80 10 50 1000
Length:  434478

Tables:   1   2   3   4   

This is table  4  of  4  ( 422 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
365698--365885
102
1.8
103
86
3
272
28
17
20
32
1.96
366500--366636
71
1.9
71
80
2
159
25
20
20
33
1.97
370292--370608
167
1.9
167
82
5
399
26
19
21
32
1.97
371105--371299
102
1.9
102
82
2
248
23
19
23
33
1.97
372472--396592
127
189.6
125
70
10
4889
28
19
21
31
1.97
376250--396762
32
642.1
32
69
11
5417
28
19
21
31
1.97
376581--376656
40
1.9
40
86
0
107
19
15
26
38
1.92
376548--376685
71
1.9
71
82
5
172
22
18
24
34
1.96
379190--379375
102
1.8
103
83
3
250
26
22
19
32
1.97
379491--380074
197
3.0
197
77
7
448
28
19
21
31
1.97
379901--380190
157
1.8
157
80
9
349
30
20
20
28
1.97
379884--380232
157
2.2
155
76
12
336
28
18
21
30
1.97
380807--380944
71
1.9
71
85
2
188
22
17
24
35
1.95
381238--381519
125
2.2
128
83
6
333
28
12
23
35
1.91
382475--382700
94
2.4
95
81
3
251
26
23
20
29
1.99
384082--384267
102
1.8
103
83
1
248
25
20
20
32
1.97
385119--385309
102
1.9
103
84
5
262
28
17
20
32
1.96
385971--386218
66
3.9
66
83
4
260
30
14
21
33
1.93
387861--387999
71
2.0
71
84
2
181
23
17
23
35
1.95
388562--388637
40
1.9
40
83
5
100
21
18
26
34
1.96
388496--388688
102
1.9
102
81
2
235
24
21
22
31
1.98
391065--391315
102
2.5
102
96
0
457
24
20
23
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394332--394464
71
1.9
71
82
6
171
24
19
23
33
1.97
394239--394720
165
3.0
166
76
11
410
26
19
22
31
1.98
394607--394977
157
2.4
156
84
2
494
28
21
22
28
1.99
395396--395533
71
1.9
71
83
2
179
23
19
23
33
1.97
395363--395558
102
1.9
103
84
1
259
27
20
20
31
1.98
395303--395659
197
1.8
198
82
4
470
27
20
20
31
1.97
400502--400526
13
1.9
13
100
0
50
36
16
16
32
1.90
400479--400546
33
2.1
33
88
2
102
35
14
14
35
1.87
401215--401301
43
2.0
43
97
0
165
29
26
2
41
1.68
402916--402962
22
2.3
20
85
10
60
44
4
17
34
1.68
409177--409201
13
1.9
13
100
0
50
36
16
16
32
1.90
409154--409221
33
2.1
33
88
2
102
35
14
14
35
1.87
418403--418467
29
2.2
29
94
0
112
12
24
0
63
1.29
419524--419560
2
18.5
2
94
0
65
45
0
2
51
1.15
421512--421559
17
2.9
17
75
15
55
60
0
0
39
0.97
421810--421854
23
2.0
23
82
8
56
44
0
6
48
1.29
423042--423105
18
3.3
18
66
29
51
53
12
6
28
1.62
423032--423113
40
2.0
40
100
0
164
53
14
7
24
1.66
423620--423653
10
3.2
10
91
8
50
52
0
0
47
1.00
423755--423836
22
3.8
22
75
15
64
54
1
0
43
1.07
423801--423837
6
6.5
6
81
12
51
51
2
0
45
1.15
423809--423839
16
1.9
16
100
0
62
45
6
0
48
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
423898--423939
20
2.0
21
86
13
61
76
4
0
19
0.96
426735--426781
21
2.2
21
100
0
94
65
8
8
17
1.44
427700--427774
20
3.8
20
78
3
71
40
13
13
33
1.83
427697--427774
40
2.0
39
84
2
102
39
14
12
33
1.84
429395--429436
2
21.0
2
100
0
84
50
0
0
50
1.00
430619--430654
16
2.2
17
90
5
56
69
0
0
30
0.89
431155--431212
30
1.9
31
85
3
82
53
0
0
46
1.00
431868--431976
15
7.1
15
71
16
55
41
0
6
52
1.27
431868--431976
31
3.5
31
76
8
98
41
0
6
52
1.27
431915--431973
16
3.8
16
77
8
59
33
0
10
55
1.33
432411--432435
13
1.9
13
100
0
50
60
0
40
0
0.97
432405--432447
22
2.0
22
90
0
68
60
0
39
0
0.97
432599--432661
22
2.7
23
80
4
74
33
0
1
65
1.03
432601--432672
6
12.7
6
72
16
55
33
0
1
65
1.02
432619--432691
37
2.0
37
84
10
96
36
1
1
60
1.14
432884--432925
22
1.9
23
85
9
61
21
0
4
73
1.01
433978--434017
14
2.8
14
84
3
53
57
2
0
40
1.12
434211--434248
17
2.3
17
90
4
60
65
2
10
21
1.35

Tables:   1   2   3   4

The End!