genome.fa.s1652.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1652
Parameters: 2 7 7 80 10 50 1000
Length:  199341

Tables:   1   2   3   4   

This is table  4  of  4  ( 395 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135715--135739	13	1.9	13	100	0	50	36	16	16	32	1.90
135780--135846	33	2.0	33	88	0	98	40	13	11	34	1.81
135802--135826	13	1.9	13	100	0	50	32	16	16	36	1.90
153307--153375	19	3.4	19	75	14	75	31	5	15	46	1.70
154063--154145	39	2.1	39	93	0	139	32	13	18	36	1.89
155101--155134	2	17.0	2	100	0	68	50	0	0	50	1.00
167844--167873	13	2.3	13	94	0	51	30	13	20	36	1.90
167824--167888	33	2.0	33	87	6	96	32	18	15	33	1.92
167939--167965	13	2.1	13	100	0	54	40	14	14	29	1.86
168499--168651	47	3.5	46	67	23	132	27	22	7	42	1.81
168481--168650	82	2.1	82	93	1	286	29	20	7	42	1.80
175745--175801	19	2.9	19	81	2	69	33	17	15	33	1.92
182032--182065	13	2.6	13	95	0	59	32	17	14	35	1.91
182198--182236	20	1.9	20	89	5	60	30	23	0	46	1.53
182274--182300	9	3.0	9	100	0	54	44	22	0	33	1.53
183969--184062	46	2.0	47	86	10	131	36	8	22	32	1.84
184474--184516	22	1.9	22	90	4	68	41	11	4	41	1.62
184643--184669	13	2.1	13	100	0	54	29	14	14	40	1.86
184624--184687	32	2.0	32	87	9	94	28	15	15	40	1.88
184653--184709	19	2.9	19	84	2	78	31	17	17	33	1.93
184738--184806	33	2.1	33	89	5	104	34	13	15	36	1.87
186583--186607	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186709--186734	13	2.0	13	100	0	52	30	15	15	38	1.88
186689--186756	33	2.1	32	91	2	109	35	19	13	32	1.90
192651--192676	8	3.2	8	100	0	52	15	0	23	61	1.33
192881--192916	13	2.8	13	95	0	63	38	16	11	33	1.84
194782--194842	20	2.9	21	87	7	97	34	0	29	36	1.58
194778--194842	22	3.0	22	86	8	107	36	0	27	35	1.57
195399--195423	13	1.9	13	100	0	50	32	16	16	36	1.90
195411--195463	20	2.6	21	82	8	65	37	15	16	30	1.90
196818--196886	33	2.1	33	86	5	95	34	20	14	30	1.92
196913--196965	20	2.7	20	88	2	72	35	13	13	37	1.83
196915--196970	19	2.8	20	86	2	69	37	12	14	35	1.84
196936--196998	32	1.9	33	87	9	94	41	12	15	30	1.85
198012--198044	15	2.1	17	88	11	52	39	6	9	45	1.61

Tables:   1   2   3   4

The End!