genome.fa.s173.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold173
Parameters: 2 7 7 80 10 50 1000
Length:  2040036

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1814 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824190--824231	19	2.1	21	82	8	52	50	0	0	50	1.00
824207--824267	27	2.3	27	80	11	63	57	1	0	40	1.08
824207--824256	25	1.9	27	84	8	68	56	2	0	42	1.11
824409--824444	2	18.0	2	100	0	72	50	0	0	50	1.00
824675--824719	23	1.9	23	82	13	56	53	0	2	44	1.13
824998--825028	14	2.2	14	100	0	62	51	0	0	48	1.00
825071--825162	47	1.9	46	86	8	123	42	2	0	55	1.12
825514--825553	20	2.0	20	90	9	64	50	0	2	47	1.14
825577--825612	18	1.9	19	88	5	56	27	2	0	69	1.02
825760--825802	19	2.3	19	80	12	52	30	0	9	60	1.28
826820--826856	3	12.3	3	100	0	74	32	0	0	67	0.91
827277--827309	5	6.8	5	86	6	50	42	3	0	54	1.15
827277--827309	14	2.3	15	89	5	50	42	3	0	54	1.15
827422--827458	2	18.5	2	100	0	74	48	0	0	51	1.00
829353--829390	19	2.0	19	100	0	76	31	0	21	47	1.51
829706--829735	3	10.0	3	100	0	60	33	0	0	66	0.92
830236--830264	2	14.5	2	100	0	58	48	0	0	51	1.00
830623--830654	3	10.7	3	93	0	55	31	0	3	65	1.08
831278--831322	20	2.3	20	85	7	58	40	0	2	57	1.11
831977--832006	2	15.0	2	100	0	60	50	0	0	50	1.00
832609--832651	22	2.0	22	85	0	59	44	2	0	53	1.13
835348--835531	95	2.0	93	89	5	282	42	3	8	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836011--836069	3	19.7	3	96	0	109	66	1	0	32	1.02
836544--836582	18	2.1	19	90	4	62	41	0	0	58	0.98
836549--836582	12	2.7	13	81	9	52	38	0	0	61	0.96
837836--837880	21	2.2	20	84	15	56	40	0	2	57	1.11
837846--837907	23	2.7	23	77	2	54	37	1	0	61	1.06
837964--838007	18	2.3	19	80	7	54	45	9	6	38	1.63
841208--841261	27	2.0	27	100	0	108	48	11	11	29	1.73
841263--841317	28	2.0	28	88	0	83	43	1	14	40	1.56
844206--844249	23	2.0	22	82	13	54	56	0	11	31	1.35
847718--847759	22	2.0	21	85	4	57	42	0	0	57	0.99
848148--848191	22	2.0	22	91	4	72	63	0	9	27	1.24
848619--848654	7	5.1	7	89	0	54	27	0	2	69	1.02
849942--849968	14	1.9	14	100	0	54	48	0	7	44	1.31
850164--850190	2	13.5	2	100	0	54	48	0	0	51	1.00
850967--851028	24	2.7	23	80	9	63	51	0	0	48	1.00
860319--860352	12	2.9	11	87	12	50	23	0	0	76	0.79
862975--863026	24	2.2	24	78	18	65	55	0	0	44	0.99
862967--863028	21	2.9	21	76	19	58	51	1	0	46	1.10
863120--863144	13	1.9	13	100	0	50	16	0	0	84	0.63
866838--866934	43	2.3	41	82	10	106	31	15	10	42	1.81
867234--867262	15	2.0	15	93	6	51	68	3	0	27	1.05
871258--871318	21	3.0	22	71	20	60	37	6	4	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871246--871331	42	2.1	39	81	10	93	38	5	5	50	1.51
871417--871504	21	4.2	21	79	5	97	37	9	3	50	1.51
871383--871445	27	2.3	27	77	0	72	38	4	7	49	1.53
872547--872579	16	2.1	16	88	11	50	36	0	3	60	1.12
873157--873190	12	2.9	11	87	12	50	23	0	0	76	0.79
873563--873593	2	15.5	2	100	0	62	51	0	0	48	1.00
875826--875877	24	2.2	24	78	18	65	55	0	0	44	0.99
875818--875879	21	2.9	21	76	19	58	51	1	0	46	1.10
883590--883637	21	2.2	22	88	7	80	47	10	8	33	1.68
884565--884597	7	4.9	7	85	7	50	72	0	15	12	1.12
884557--884592	13	3.0	13	84	15	51	72	0	13	13	1.13
884812--884888	21	3.7	21	85	3	102	35	11	16	36	1.86
884924--884991	19	3.9	19	78	21	85	35	11	14	38	1.83
884926--884988	32	2.0	32	96	0	117	34	12	15	36	1.86
884945--884969	13	1.9	13	100	0	50	36	16	16	32	1.90
885011--885077	33	2.0	33	85	0	89	25	13	16	44	1.84
885589--885622	17	2.0	17	88	0	50	82	14	2	0	0.79
887415--887760	52	6.6	54	70	15	172	29	26	12	31	1.92
887533--887608	27	2.8	27	86	6	100	25	32	19	22	1.97
887591--887761	52	3.3	51	79	6	184	29	26	12	30	1.93
887744--887818	28	2.7	28	87	0	96	24	33	18	24	1.97
887422--887818	212	1.9	211	89	3	618	28	27	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887854--887908	28	1.9	29	88	3	85	20	27	20	32	1.97
887774--887980	83	2.6	79	81	6	220	23	29	15	30	1.96
901040--902169	59	19.3	59	84	7	1362	25	28	20	25	1.99
901066--902169	175	6.3	174	88	4	1464	25	28	20	25	1.99
902259--902350	42	2.2	43	80	9	100	17	28	11	42	1.85
902969--903036	19	3.9	19	78	21	85	35	11	14	38	1.83
902971--903033	32	2.0	32	96	0	117	34	12	15	36	1.86
902990--903014	13	1.9	13	100	0	50	36	16	16	32	1.90
905079--905249	52	3.3	51	75	8	166	30	27	11	30	1.92
907251--907276	13	2.0	13	100	0	52	38	15	15	30	1.88
907233--907296	32	2.0	33	87	3	94	40	17	14	28	1.88
909495--909539	21	2.1	21	84	8	56	53	4	20	22	1.63
911342--911380	15	2.6	15	91	0	60	51	15	20	12	1.76
913444--913482	13	3.0	13	92	0	69	30	12	15	41	1.85
913603--913648	21	2.2	20	81	11	58	32	19	4	43	1.71
916037--916062	13	2.0	13	100	0	52	38	15	15	30	1.88
916019--916082	32	2.0	33	87	3	94	40	17	14	28	1.88
922951--922982	16	2.0	16	93	0	55	46	0	0	53	1.00
926916--926993	20	3.9	20	73	6	68	34	11	10	43	1.75
932138--932266	52	2.5	52	93	0	222	31	16	16	36	1.91
932275--932299	13	1.9	13	100	0	50	36	16	16	32	1.90
932361--932385	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934798--934836	18	2.1	19	85	4	53	12	7	7	71	1.29
944533--944592	11	5.5	11	80	4	68	85	10	3	1	0.79
945804--946639	28	29.6	28	86	2	1066	28	30	17	23	1.97
947243--947316	20	3.7	20	75	0	85	32	13	10	43	1.79
949847--949877	13	2.4	13	100	0	62	38	6	0	54	1.26
963906--963956	11	4.5	11	81	18	68	88	7	1	1	0.67
963904--963968	24	2.9	23	82	13	73	84	10	3	1	0.80
963905--963981	32	2.3	33	78	13	77	81	11	3	2	0.92
965197--966635	28	48.6	28	81	7	1066	30	29	18	22	1.97
965200--966795	113	13.4	113	80	8	1093	30	28	18	22	1.97
965200--966852	284	6.1	259	78	9	1253	30	28	18	22	1.97
965200--966852	32	55.2	30	82	7	1186	30	28	18	22	1.97
966917--967038	48	2.5	48	89	0	181	19	26	17	36	1.94
967427--967480	20	2.7	20	82	0	63	33	12	14	38	1.85
980827--980865	20	2.0	20	89	0	60	46	0	0	53	1.00
981056--981088	17	2.0	16	94	5	57	30	6	9	54	1.56
982290--982343	21	2.7	20	86	13	67	55	3	0	40	1.17
982290--982360	10	7.0	10	75	23	60	53	2	1	42	1.24
982285--982343	20	2.9	20	83	16	77	54	5	0	40	1.23
982296--982370	32	2.4	31	82	12	84	52	4	1	42	1.28
982483--982576	11	9.5	11	67	25	50	52	12	1	34	1.47
982511--982562	15	3.1	15	73	23	50	51	7	0	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982385--982576	21	9.6	21	71	13	93	51	8	3	36	1.49
982546--982588	21	2.0	21	81	0	50	58	6	2	32	1.38
982605--982743	21	6.7	21	73	8	97	54	7	5	31	1.53
982602--982720	40	2.9	40	76	13	91	54	7	5	32	1.50
982656--982736	42	1.9	43	85	5	112	56	6	6	30	1.48
983003--983190	21	8.7	21	69	13	85	54	10	3	31	1.50
983116--983309	104	1.9	103	82	5	248	50	10	5	33	1.59
983375--983571	21	9.4	21	77	1	153	52	8	3	35	1.49
983532--983579	11	4.7	10	82	7	53	62	8	0	29	1.24
983530--983573	11	4.1	11	82	5	63	61	6	0	31	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16