genome.fa.s174.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold174
Parameters: 2 7 7 80 10 50 1000
Length:  2085601

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  8  of  15  ( 1687 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922063--922138	39	2.0	38	81	2	89	47	0	0	52	1.00
922550--922653	17	6.4	17	72	18	69	61	2	0	35	1.11
922550--922673	15	7.8	16	72	19	73	61	2	0	36	1.09
922829--922859	16	1.9	16	93	0	53	51	0	6	41	1.27
923147--923201	21	2.8	20	71	21	53	61	1	0	36	1.06
923740--923767	3	9.3	3	100	0	56	32	0	0	67	0.91
924374--924446	16	4.6	16	80	0	74	38	2	1	57	1.22
924376--924446	32	2.2	32	89	0	106	39	2	1	56	1.23
924384--924447	16	4.0	16	81	0	83	42	3	1	53	1.26
924427--924472	25	1.9	23	86	8	65	50	0	4	45	1.21
924826--924893	24	2.7	26	77	20	74	51	0	0	48	1.00
924935--925009	27	2.9	25	74	16	64	44	0	2	53	1.14
925028--925067	15	2.5	17	80	19	59	60	0	0	40	0.97
925019--925063	15	3.1	15	84	12	58	62	0	0	37	0.96
927222--927300	42	1.9	41	84	7	106	48	0	0	51	1.00
927427--927455	2	14.5	2	100	0	58	48	0	0	51	1.00
928214--928244	2	15.5	2	100	0	62	48	0	0	51	1.00
929573--929614	22	1.9	22	85	9	59	35	0	2	61	1.09
931412--931465	16	3.4	16	74	7	56	38	0	0	61	0.96
931436--931498	20	3.0	21	71	13	58	41	0	0	58	0.98
931745--931801	29	2.0	30	86	6	82	42	1	0	56	1.10
931767--931883	38	3.1	38	79	7	132	41	1	0	56	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935014--935057	20	2.2	20	84	8	54	43	2	4	50	1.35
937345--937539	97	2.0	96	94	1	345	42	21	16	20	1.90
937524--937577	27	2.0	27	88	0	81	57	1	0	40	1.09
937559--937593	5	6.8	5	87	6	52	37	0	2	60	1.12
937559--937593	16	2.2	16	90	5	54	37	0	2	60	1.12
937561--937593	11	3.1	11	91	4	50	33	0	3	63	1.10
937675--937720	6	8.0	6	83	7	51	63	0	0	36	0.95
937657--937745	29	3.1	28	73	19	76	56	0	0	43	0.99
937642--937698	21	2.6	22	81	8	64	57	0	0	42	0.98
937687--937762	16	4.9	16	71	20	72	52	0	0	47	1.00
937665--937754	45	1.9	48	88	8	141	56	0	0	43	0.99
937684--937801	45	2.6	46	80	10	127	51	2	0	45	1.14
937821--937918	32	3.0	32	80	14	103	40	2	0	57	1.10
937818--937898	21	4.2	19	68	19	51	40	2	0	56	1.12
937869--937926	21	2.7	21	83	2	71	43	0	0	56	0.99
937835--937912	36	2.2	37	88	4	115	42	1	0	56	1.07
938733--938763	2	15.5	2	100	0	62	48	0	0	51	1.00
939418--939572	50	3.0	53	85	5	226	36	11	14	36	1.83
942325--942384	2	30.0	2	100	0	120	50	0	0	50	1.00
946763--946800	14	2.6	15	83	4	51	52	0	0	47	1.00
946745--946813	23	3.1	21	84	10	93	50	0	0	49	1.00
946902--946941	22	1.9	20	90	10	62	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947717--947772	22	2.5	23	78	18	64	35	0	0	64	0.94
949163--949197	13	2.8	13	91	4	54	11	14	2	71	1.25
949518--949542	2	12.5	2	100	0	50	52	0	0	48	1.00
949766--949812	22	2.1	22	84	7	60	59	4	0	36	1.17
949993--950091	2	49.5	2	84	15	134	45	4	0	50	1.20
949993--950091	20	4.9	20	95	4	166	45	4	0	50	1.20
951145--951177	3	11.0	3	93	0	57	3	0	63	33	1.10
951142--951177	12	3.0	12	95	0	63	5	0	61	33	1.19
952740--952768	2	15.0	2	92	7	51	48	0	0	51	1.00
952743--952768	13	2.0	13	100	0	52	46	0	0	53	1.00
953098--953156	30	2.0	30	87	12	86	47	0	1	50	1.11
954306--954360	17	3.1	18	69	12	51	47	0	0	52	1.00
954499--954531	12	2.8	12	90	0	57	21	15	0	63	1.30
955305--955341	2	19.5	2	83	10	51	54	0	0	45	1.00
956695--956741	23	2.0	24	91	8	78	44	4	2	48	1.34
956695--956744	25	1.9	25	88	8	73	44	4	2	50	1.32
957229--957262	15	2.1	17	89	10	54	44	5	0	50	1.26
957676--957718	18	2.1	21	76	24	56	62	9	4	23	1.44
957678--957713	18	2.0	18	100	0	72	61	11	5	22	1.50
970177--970210	17	1.9	18	88	5	52	61	0	0	38	0.96
974001--974065	27	2.4	27	74	7	69	16	6	67	9	1.38
985171--985526	142	2.5	142	85	0	489	23	14	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985554--985584	2	15.5	2	100	0	62	0	0	48	51	1.00
986870--986899	2	15.0	2	100	0	60	0	50	0	50	1.00
987067--987098	16	2.0	16	100	0	64	0	18	18	62	1.33
987779--987814	16	2.2	16	90	0	54	38	0	5	55	1.23
989939--990109	82	2.1	81	86	5	247	39	6	7	46	1.57
990442--990507	29	2.3	29	82	10	84	45	3	0	51	1.16
991363--991396	2	17.0	2	100	0	68	0	50	0	50	1.00
991471--991562	43	2.1	43	95	2	166	34	26	3	35	1.73
993828--993881	6	9.5	6	84	8	69	68	0	0	31	0.90
993916--993987	37	1.9	38	83	8	94	40	4	1	54	1.28
994061--994110	22	2.3	22	79	3	57	46	0	0	54	1.00
994073--994103	16	1.9	16	93	0	53	35	0	0	64	0.94
994304--994361	8	7.6	8	73	11	50	48	0	0	51	1.00
994407--994445	12	3.3	12	82	7	53	28	0	2	69	1.02
994567--994631	25	2.5	26	79	18	73	46	0	0	53	1.00
995180--995222	21	2.0	21	90	0	68	23	0	2	74	0.93
996024--996160	67	2.0	67	97	0	256	27	13	13	45	1.81
997201--997231	2	15.5	2	93	0	53	48	0	3	48	1.17
999753--999792	14	3.1	14	82	17	59	37	0	0	62	0.95
999753--999801	25	1.9	26	83	4	64	42	0	0	57	0.99
1002472--1002505	2	17.0	2	100	0	68	50	0	0	50	1.00
1002733--1002766	14	2.4	14	90	0	50	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003529--1003561	17	2.0	17	88	5	50	60	0	0	39	0.97
1005329--1005377	24	2.0	24	84	7	64	36	0	12	51	1.40
1008752--1008795	2	22.5	2	90	4	72	54	0	0	45	0.99
1010091--1010138	21	2.2	22	77	3	53	60	2	0	37	1.09
1010477--1010502	5	5.2	5	100	0	52	19	19	0	61	1.35
1010961--1011002	20	2.2	18	87	12	57	26	4	0	69	1.08
1015054--1015090	18	2.0	19	89	5	58	62	0	0	37	0.96
1015531--1015580	23	2.0	23	85	11	64	36	0	0	64	0.94
1019317--1019380	30	2.1	32	85	11	89	43	0	1	54	1.09
1019334--1019380	15	3.1	15	75	25	53	42	0	2	55	1.12
1019364--1019443	27	2.9	28	72	14	67	32	0	1	66	1.00
1019384--1019433	16	2.9	17	79	11	57	28	0	2	70	0.99
1019378--1019437	21	2.7	21	75	19	59	26	0	1	71	0.95
1019695--1019743	22	2.3	21	78	3	53	36	0	4	59	1.17
1019781--1019820	20	2.0	21	85	14	57	42	0	0	57	0.98
1020880--1020912	2	16.5	2	100	0	66	51	0	0	48	1.00
1021217--1021266	22	2.2	23	85	7	66	38	4	2	56	1.30
1022954--1022986	2	16.5	2	100	0	66	51	0	0	48	1.00
1023062--1023110	2	24.5	2	100	0	98	48	0	0	51	1.00
1023487--1023529	2	21.5	2	90	0	50	41	2	6	48	1.43
1024701--1024763	31	2.0	31	93	0	108	33	7	11	47	1.68
1025545--1025571	9	3.0	9	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1027335--1027376	22	2.0	21	86	13	59	61	0	0	38	0.96
1027774--1027826	11	5.2	11	73	13	51	30	0	1	67	1.01
1027782--1027831	20	2.5	20	78	18	59	32	0	2	66	1.03
1028327--1028405	34	2.4	34	83	12	110	48	3	2	45	1.34
1030158--1030183	7	3.7	7	100	0	52	57	0	0	42	0.98
1032396--1032485	20	4.2	21	75	19	71	51	1	1	46	1.15
1034554--1034595	14	2.8	15	83	16	52	57	0	0	42	0.99
1036343--1036455	51	2.2	51	91	0	181	10	12	45	31	1.76
1036423--1036485	30	2.1	30	87	0	90	6	9	47	36	1.62
1036372--1036677	81	3.8	81	87	3	422	9	11	49	30	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15