Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1740
Parameters: 2 7 7 80 10 50 1000
Length:  654062

Tables:   1   2   3   4   

This is table  4  of  4  ( 383 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
618587--618632
19
2.3
20
85
7
67
30
8
15
45
1.76
619258--619348
39
2.3
41
77
12
100
32
21
6
38
1.80
620714--620756
20
2.1
20
82
4
50
9
27
44
18
1.80
621188--621225
13
2.9
13
96
0
67
31
15
18
34
1.92
623307--623337
15
2.1
15
93
0
53
12
22
16
48
1.80
625139--625183
21
2.1
21
84
8
56
22
20
4
53
1.63
627414--627439
13
2.0
13
100
0
52
30
15
15
38
1.88
627394--627457
32
2.0
33
87
3
94
28
12
15
43
1.83
627832--636397
476
18.1
475
81
3
9203
31
17
13
36
1.89
637138--637186
13
4.2
13
75
24
63
36
18
12
32
1.88
637138--637207
33
2.1
34
89
7
108
35
20
11
32
1.88
637236--637290
19
2.8
20
80
5
67
36
16
14
32
1.89
637276--637302
13
2.1
13
100
0
54
40
14
14
29
1.86
638974--641461
476
5.2
474
80
4
2474
30
17
14
37
1.90
638974--641388
947
2.5
944
80
5
2683
31
18
14
36
1.90
642660--642698
20
1.9
21
94
5
71
35
10
10
43
1.73
642754--642779
13
2.0
13
100
0
52
30
15
15
38
1.88
644853--644895
20
2.1
20
82
4
50
9
27
44
18
1.80
645170--645216
21
2.3
21
82
10
62
44
4
19
31
1.70
645339--645371
13
2.5
13
95
0
57
33
18
15
33
1.92
649248--649303
21
2.6
22
75
8
62
23
12
7
57
1.60
650086--650931
459
1.8
456
88
2
1284
31
18
13
37
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
653167--653243
20
3.8
20
86
6
111
40
12
15
31
1.85

Tables:   1   2   3   4

The End!