genome.fa.s1740.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1740
Parameters: 2 7 7 80 10 50 1000
Length:  654062

Tables:   1   2   3   4   

This is table  3  of  4  ( 383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423333--423377	20	2.2	20	88	0	63	35	20	8	35	1.84
423429--423453	13	1.9	13	100	0	50	36	16	16	32	1.90
424218--428674	475	9.4	476	80	3	4624	30	18	14	36	1.90
431890--431930	21	2.0	21	85	9	57	36	12	14	36	1.84
433549--436730	476	6.7	473	81	3	3381	31	17	13	37	1.89
437192--437262	34	2.1	34	86	0	97	61	14	9	14	1.55
444833--444857	13	1.9	13	100	0	50	36	16	16	32	1.90
444924--444948	13	1.9	13	100	0	50	32	16	16	36	1.90
444957--445077	52	2.3	52	95	2	217	34	18	19	28	1.95
445936--445977	21	2.0	21	86	4	59	21	14	16	47	1.82
449947--449989	13	3.3	13	86	0	59	37	11	13	37	1.82
451512--451561	20	2.5	20	87	9	68	28	14	16	42	1.86
451512--451580	20	3.5	19	80	7	59	28	11	15	43	1.82
451633--451658	13	2.0	13	100	0	52	38	15	7	38	1.76
461767--461793	12	2.2	12	100	0	54	22	29	0	48	1.51
461100--463734	476	5.6	475	80	6	2727	32	17	12	36	1.88
461100--463734	936	2.8	933	81	5	2801	32	17	12	36	1.88
464477--464544	33	2.1	33	88	2	102	32	11	17	38	1.86
467069--467094	13	2.0	13	100	0	52	38	15	15	30	1.88
471131--471163	16	2.1	16	88	5	50	33	9	0	57	1.30
473212--473237	13	2.0	13	100	0	52	38	15	15	30	1.88
473190--473257	32	2.1	31	84	10	84	33	13	17	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473634--476306	477	5.6	474	83	4	3121	31	18	13	36	1.90
473634--476306	952	2.8	946	83	5	3311	31	18	13	36	1.90
475404--476049	159	4.1	159	64	16	348	31	19	14	35	1.92
476431--476472	21	2.0	21	85	4	57	42	7	14	35	1.73
476705--476729	13	1.9	13	100	0	50	32	16	16	36	1.90
476685--476752	33	2.1	33	88	2	102	35	17	14	32	1.91
481866--481930	20	3.6	20	73	26	81	44	15	12	27	1.82
481834--481930	33	3.0	33	92	1	151	41	16	14	27	1.87
481886--481910	13	1.9	13	100	0	50	36	16	16	32	1.90
484130--484174	21	2.1	21	84	8	56	53	4	20	22	1.63
485977--486007	15	2.1	15	93	0	53	48	16	22	12	1.80
488077--488115	13	3.0	13	88	0	60	30	15	15	38	1.88
488236--488281	21	2.2	20	81	11	58	32	19	4	43	1.71
492879--492903	13	1.9	13	100	0	50	32	20	16	32	1.94
495310--495353	20	2.3	19	80	7	54	52	11	13	22	1.72
495398--495465	33	2.1	32	86	2	91	35	16	14	33	1.89
495744--497556	475	3.8	472	82	3	2132	31	17	13	36	1.89
497251--497917	368	1.8	368	85	3	948	32	16	13	37	1.89
496710--498402	844	2.0	841	84	3	2190	32	16	13	37	1.88
497553--498892	476	2.8	476	84	2	1742	31	17	14	36	1.90
498664--499118	226	2.0	226	81	2	529	33	18	12	34	1.89
498905--506858	476	16.8	474	81	4	8663	31	18	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507280--507310	13	2.4	13	94	0	53	35	16	12	35	1.87
510188--510253	19	3.8	18	74	25	70	40	21	13	24	1.89
510208--510234	13	2.1	13	100	0	54	40	14	14	29	1.86
510189--510253	33	2.0	32	93	3	112	41	20	13	24	1.88
510748--510792	15	2.8	16	83	10	65	31	33	0	35	1.58
510778--510831	19	2.7	20	85	11	74	24	38	1	35	1.66
518370--518440	33	2.2	33	85	10	92	29	16	15	38	1.90
518403--518455	20	2.7	20	96	0	97	30	18	16	33	1.94
518485--518538	19	2.7	20	88	5	74	35	18	14	31	1.91
518527--518551	13	1.9	13	100	0	50	32	16	20	32	1.94
518508--518571	32	2.0	33	87	3	94	39	17	17	26	1.91
522304--522332	13	2.2	13	100	0	58	27	13	17	41	1.87
524170--524257	39	2.2	40	83	8	106	32	2	29	35	1.70
524189--524249	19	3.2	19	71	13	61	34	1	32	31	1.68
524785--524849	33	2.0	32	87	3	94	30	16	15	36	1.90
524819--524874	21	2.8	19	86	5	67	35	12	16	35	1.86
525671--531971	476	13.3	475	81	5	6728	31	18	13	36	1.90
532038--533125	476	2.3	476	86	2	1481	31	18	13	36	1.90
534159--534501	105	3.3	104	70	12	279	32	11	26	29	1.92
534164--534334	51	3.3	51	79	4	198	32	11	26	29	1.92
534317--534392	27	2.8	28	88	6	102	21	21	34	23	1.97
534376--534510	51	2.6	51	79	12	150	31	9	25	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536838--536904	33	2.0	33	85	0	89	43	14	14	26	1.85
536924--536991	19	3.9	18	76	23	83	38	14	11	35	1.83
536946--536970	13	1.9	13	100	0	50	32	16	16	36	1.90
536927--536989	32	2.0	32	96	0	117	36	15	12	34	1.86
537027--537103	21	3.7	21	85	3	102	33	15	15	35	1.89
537102--537137	16	2.2	17	95	5	65	13	0	0	86	0.58
537700--538282	55	10.6	55	91	4	853	20	20	30	28	1.98
538652--539258	322	1.9	317	84	5	810	31	18	16	33	1.93
538770--539374	322	1.9	322	78	4	666	32	18	15	34	1.92
538953--541795	476	5.9	477	80	4	2966	31	17	14	36	1.90
541410--542177	382	2.0	382	81	2	905	30	17	13	38	1.89
542645--542674	13	2.3	13	100	0	60	30	16	13	40	1.87
542694--542743	20	2.5	20	80	6	57	28	16	12	44	1.83
545030--545169	50	2.7	51	81	3	165	31	22	9	36	1.86
545110--545299	79	2.4	78	76	3	182	31	23	12	33	1.91
545160--545327	79	2.1	79	80	4	187	30	22	13	33	1.92
547275--548394	475	2.4	475	86	1	1557	31	17	13	37	1.89
549249--549274	13	2.0	13	100	0	52	38	15	15	30	1.88
551552--551586	13	2.7	13	95	0	61	31	17	17	34	1.93
557199--557224	13	2.0	13	100	0	52	38	15	15	30	1.88
557176--557240	33	2.0	32	91	8	105	30	15	16	36	1.90
562866--562923	19	2.9	19	87	5	80	32	15	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568805--568857	18	3.1	18	74	20	51	24	0	22	52	1.47
570851--570891	19	2.2	19	95	0	73	36	4	34	24	1.77
571440--571497	19	2.9	19	82	5	71	34	15	17	32	1.91
574234--574286	19	2.7	20	85	8	72	28	13	18	39	1.88
574234--574292	19	3.0	18	80	14	64	25	11	22	40	1.88
577245--577284	13	3.1	13	81	0	53	32	15	15	37	1.88
579752--579803	20	2.6	20	93	0	86	34	15	15	34	1.89
580662--589987	476	19.7	476	80	5	9463	31	18	13	36	1.90
580663--589984	942	9.9	943	82	5	9195	31	18	13	36	1.90
590726--590777	19	2.7	20	87	6	79	28	13	19	38	1.89
590726--590783	19	3.0	18	82	12	71	25	12	22	39	1.89
590797--590869	20	3.6	20	81	9	76	30	16	13	39	1.87
590817--590872	20	2.8	20	89	5	78	30	16	14	39	1.88
591456--591499	21	2.1	21	83	8	54	25	31	4	38	1.76
592821--592863	20	2.1	20	82	4	50	13	27	39	18	1.89
593304--593329	13	2.0	13	100	0	52	38	15	15	30	1.88
597237--597281	21	2.1	21	84	8	56	22	20	4	53	1.63
599495--599520	13	2.0	13	100	0	52	30	15	15	38	1.88
599475--599538	32	2.0	33	90	3	103	28	14	18	39	1.90
599475--599545	19	4.0	18	72	25	62	26	12	21	39	1.89
599905--604768	476	10.4	475	78	7	4670	31	18	13	36	1.89
604778--607164	475	5.0	475	83	4	2896	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607547--607572	13	2.0	13	100	0	52	38	15	15	30	1.88
607529--607592	32	2.0	33	87	3	94	40	17	14	28	1.88
608645--609684	475	2.2	473	83	3	1302	31	17	15	36	1.91
609276--610048	418	1.9	417	81	1	949	31	17	13	37	1.89
609679--613520	475	8.1	474	78	5	3639	31	17	13	36	1.89
613805--613873	19	4.0	18	73	22	76	33	11	17	37	1.86
613827--613858	13	2.4	14	94	5	57	34	12	15	37	1.85
613808--613870	32	2.0	32	93	0	108	33	12	17	36	1.88
613893--613946	20	2.7	19	86	8	72	27	18	14	38	1.90
614860--614898	20	2.0	20	89	0	60	23	17	12	46	1.83

Tables:   1   2   3   4