genome.fa.s176.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold176
Parameters: 2 7 7 80 10 50 1000
Length:  960511

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153875--153926	24	2.2	24	86	6	70	0	3	9	86	0.69
153875--153952	31	2.6	29	84	13	95	0	3	10	85	0.71
153875--153953	28	2.9	28	81	9	83	0	3	10	86	0.70
166507--166625	51	2.3	51	86	0	175	31	14	26	27	1.95
166328--166651	130	2.5	128	75	12	327	33	12	26	27	1.92
166610--166684	28	2.7	28	91	8	118	24	17	33	25	1.96
166668--166783	51	2.3	51	84	0	151	31	12	25	31	1.92
166743--167017	79	3.5	78	86	2	356	33	14	24	28	1.94
166343--166861	288	1.8	287	80	5	636	33	12	25	27	1.93
166719--167017	158	1.9	155	84	3	393	32	14	24	28	1.95
166954--167079	51	2.5	48	79	9	135	33	12	26	27	1.93
168669--168763	20	4.8	19	80	5	91	44	14	14	26	1.84
168676--168763	40	2.2	40	87	0	122	44	14	14	26	1.84
171844--172971	333	3.4	330	83	5	1383	51	9	12	26	1.69
171844--172971	167	6.8	166	83	5	1351	51	9	12	26	1.69
173729--173829	50	2.0	50	98	0	193	30	34	9	24	1.88
174135--174188	20	2.8	19	83	8	56	33	16	12	37	1.87
174205--174299	20	4.8	20	89	0	145	32	15	12	38	1.85
174124--174259	70	1.9	71	84	1	184	30	15	12	41	1.84
178679--179305	168	3.8	165	82	6	691	51	9	12	26	1.69
180197--180860	42	15.9	42	72	9	336	32	17	29	20	1.95
180197--180872	84	8.1	84	75	5	427	32	17	29	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180281--180754	167	2.8	168	78	6	406	33	17	29	19	1.95
180341--180669	125	2.6	124	74	8	290	32	17	29	20	1.95
180269--180872	126	4.8	124	72	7	423	33	17	29	19	1.95
181357--181554	78	2.5	78	80	0	189	30	14	26	28	1.95
184213--184443	79	2.9	78	78	5	232	29	25	11	34	1.90
196771--196808	9	4.1	9	89	3	58	84	0	15	0	0.63
197751--197892	61	2.3	62	92	3	234	26	30	17	25	1.97
197871--197919	25	2.0	25	100	0	98	30	28	16	24	1.96
197810--197980	86	2.0	86	90	2	272	27	27	18	26	1.98
197896--198337	59	7.5	59	91	3	633	25	27	19	26	1.99
198397--198493	35	2.6	35	77	8	86	21	19	15	43	1.88
198349--198534	42	4.6	42	73	11	165	19	20	13	45	1.85
198357--198616	117	2.2	117	84	2	335	21	19	15	43	1.87
198612--198821	59	3.7	58	85	9	306	26	27	20	26	1.99
198857--199002	42	3.7	38	74	11	109	15	24	17	42	1.88
199652--199723	20	3.7	20	86	1	101	27	13	12	45	1.80
202035--202099	28	2.3	28	83	0	76	26	26	15	32	1.95
202057--202625	79	7.2	78	80	5	518	30	23	11	34	1.91
202057--202623	237	2.4	237	81	5	635	30	23	11	34	1.91
209722--209748	6	4.5	6	100	0	54	0	0	33	66	0.92
216215--216261	10	4.7	10	79	10	51	6	21	0	72	1.07
216214--216265	11	4.9	10	77	11	50	5	23	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216654--217458	166	4.8	166	83	5	915	52	7	12	27	1.66
223485--223537	20	2.6	21	85	8	65	28	18	11	41	1.85
223491--223537	21	2.3	20	85	10	60	29	21	10	38	1.87
226887--226928	20	2.0	21	86	13	61	21	14	11	52	1.73
229588--229658	33	2.2	32	82	7	90	15	16	39	28	1.89
229670--229723	27	2.0	28	85	3	74	37	12	24	25	1.91
229928--230027	52	1.9	52	82	8	123	38	18	20	24	1.93
231258--231314	6	9.8	6	80	16	59	0	0	14	85	0.59
231258--231311	16	3.3	16	87	10	74	0	0	14	85	0.61
231247--231314	26	2.6	24	82	17	82	1	1	13	83	0.78
235805--235834	16	1.9	16	93	6	53	0	0	13	86	0.57
236578--236620	22	1.9	23	95	4	79	6	23	13	55	1.62
237411--237490	43	1.9	41	82	5	97	31	20	22	26	1.98
237366--237615	125	2.0	125	96	0	464	28	18	21	32	1.96
237536--237617	43	2.0	41	82	4	101	30	19	23	26	1.98
238191--238938	42	17.7	42	72	7	390	36	18	27	17	1.93
238471--238716	127	2.0	125	86	4	343	37	18	26	17	1.92
238595--238908	83	3.7	82	78	4	306	35	19	27	17	1.94
238711--238990	125	2.2	126	84	0	337	36	20	26	17	1.94
238737--238990	126	2.0	125	85	0	337	36	20	26	16	1.93
247187--247212	13	2.0	13	100	0	52	30	15	15	38	1.88
247910--247973	20	3.1	21	82	8	78	26	31	4	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252305--252343	12	3.1	12	89	10	60	41	15	17	25	1.89
254419--254449	15	2.1	15	93	0	53	12	22	16	48	1.80
263797--263822	13	2.0	13	100	0	52	30	15	15	38	1.88
264516--264579	20	3.1	21	82	8	78	26	31	4	37	1.77
266381--266419	13	3.0	13	100	0	78	38	15	15	30	1.88
268497--268527	15	2.1	15	93	0	53	12	22	16	48	1.80
270331--270375	21	2.1	21	88	8	65	22	17	4	55	1.60
272591--272616	13	2.0	13	100	0	52	30	15	15	38	1.88
272571--272634	32	2.0	33	87	3	94	29	14	14	42	1.84
278672--278701	16	1.9	16	93	6	53	3	0	10	86	0.67
279265--279307	22	1.9	23	90	4	70	6	23	13	55	1.62
279987--280029	19	2.3	19	92	4	70	48	11	20	18	1.79
280123--280205	43	2.0	41	83	4	103	30	21	22	25	1.99
283358--283420	33	1.9	33	87	6	92	33	15	12	38	1.86
293233--293448	96	2.2	97	81	2	256	33	12	26	27	1.92
294860--294885	13	2.0	13	100	0	52	30	15	15	38	1.88
295605--295647	21	2.0	21	82	8	52	25	30	4	39	1.76
297444--297482	13	3.0	13	96	0	69	35	15	17	30	1.91
299560--299590	15	2.1	15	93	0	53	12	22	16	48	1.80
303668--303693	13	2.0	13	100	0	52	30	15	15	38	1.88
306435--307248	211	3.9	206	76	6	612	36	15	22	25	1.94
306630--307148	264	2.0	264	83	3	650	35	16	23	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306989--307303	161	2.0	161	88	2	472	38	15	20	25	1.92
306362--307297	53	17.9	52	71	8	429	36	15	22	25	1.94
312613--312708	1	96.0	1	74	0	75	86	12	1	0	0.63
312613--312708	11	9.2	11	77	11	112	86	12	1	0	0.63
312613--312708	32	3.1	30	88	7	138	86	12	1	0	0.63
312613--312708	31	3.1	31	88	10	142	86	12	1	0	0.63
313911--314574	28	23.5	28	87	3	857	28	30	18	23	1.97
313911--314652	56	13.0	56	84	5	843	28	29	17	23	1.97
321536--321594	23	2.5	24	78	10	68	61	0	6	32	1.22
321604--321665	32	1.9	33	87	9	92	50	1	4	43	1.33
323522--323560	13	3.0	13	85	11	53	64	0	0	35	0.94
323552--323617	31	2.2	29	84	7	80	54	4	0	40	1.21
326672--326696	12	2.1	12	100	0	50	16	32	24	28	1.96
326900--326977	37	2.0	40	90	7	126	44	5	7	42	1.55
326993--327020	2	14.0	2	100	0	56	50	0	50	0	1.00
340348--340386	16	2.4	16	78	0	51	23	10	20	46	1.81
341789--341825	2	19.0	2	88	5	58	48	0	2	48	1.15
344258--344294	13	2.8	13	91	0	65	37	18	8	35	1.81
346037--346067	3	10.3	3	92	0	53	35	0	35	29	1.58
349183--349335	79	1.9	79	85	0	207	34	9	24	30	1.88
349296--349364	28	2.5	28	90	0	102	27	15	33	23	1.95
349323--349765	79	5.6	79	93	1	710	30	15	28	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349717--349786	27	2.5	28	83	2	88	22	18	34	24	1.96
352237--352288	21	2.6	21	90	6	81	32	15	13	38	1.86
352893--353114	119	1.9	117	82	10	283	40	14	24	20	1.90
353147--353374	61	3.8	61	83	4	275	27	19	27	25	1.99
353413--354117	55	12.4	55	84	7	828	24	20	27	26	1.99
355185--355250	15	4.5	14	87	10	80	1	1	9	87	0.66
355185--355250	1	66.0	1	75	0	60	1	1	9	87	0.66
355192--355250	21	2.8	20	87	12	84	1	0	10	88	0.60
355185--355249	25	2.6	24	79	13	69	1	1	9	87	0.67
367667--367697	16	2.0	16	93	6	55	51	0	9	38	1.35

Tables:   1   2   3   4   5   6