genome.fa.s176.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold176
Parameters: 2 7 7 80 10 50 1000
Length:  960511

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865938--865964	13	2.1	13	100	0	54	40	14	14	29	1.86
866016--866078	19	3.7	18	74	24	64	38	19	11	31	1.86
866009--866089	32	2.5	32	91	0	135	37	17	12	33	1.87
867367--867416	20	2.6	19	84	6	64	34	16	12	38	1.85
882586--882666	37	2.2	37	97	0	153	28	16	12	43	1.84
883035--883477	28	15.7	28	84	9	526	31	28	17	22	1.97
883035--883471	57	7.7	56	85	7	555	31	29	17	22	1.96
883543--883865	49	6.6	49	82	4	343	24	25	16	34	1.95
883585--883846	101	2.6	98	85	1	353	25	25	14	33	1.94
889019--889693	79	8.5	79	84	2	682	29	24	11	33	1.91
901849--901951	50	2.1	50	98	0	197	37	11	28	22	1.89
902104--902152	17	2.9	16	76	8	53	77	18	4	0	0.92
902140--902189	16	3.2	16	81	13	61	84	4	12	0	0.76
902140--902194	7	7.6	7	82	10	58	83	3	12	0	0.77
903165--903691	59	9.0	59	83	8	600	26	27	19	26	1.99
903708--903888	75	2.4	75	78	6	195	20	25	16	37	1.94
904444--904526	20	4.2	20	78	9	89	32	13	10	43	1.78
906822--907057	79	3.0	77	85	7	332	29	27	11	31	1.92
906991--907108	50	2.3	51	83	2	157	30	26	11	31	1.92
906911--907182	129	2.1	130	87	6	392	30	25	11	32	1.90
906833--907257	208	2.0	209	85	6	578	29	24	11	33	1.91
907042--907373	158	2.1	157	83	2	405	29	22	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907042--907422	79	4.8	79	80	2	338	30	23	12	34	1.91
908875--909305	218	2.0	218	88	0	646	29	18	12	39	1.87
909090--912854	476	7.9	475	84	3	4393	30	17	14	37	1.89
913121--913174	20	2.7	20	91	0	81	38	22	12	25	1.90
921326--921364	20	2.0	19	95	5	69	35	23	10	30	1.88
921386--921438	21	2.5	22	82	11	67	39	16	15	28	1.89
921444--921474	11	2.8	11	95	0	53	22	16	29	32	1.95
921524--922770	475	2.6	473	84	3	1544	31	18	13	36	1.89
923198--923224	13	2.1	13	100	0	54	40	14	14	29	1.86
923180--923243	32	2.0	33	87	3	94	43	14	14	28	1.83
929459--929504	21	2.2	20	81	11	58	32	19	4	43	1.71
931174--931264	39	2.3	40	77	9	96	38	5	20	35	1.76
931689--931752	20	3.7	18	74	25	66	43	15	12	28	1.83
931707--931732	13	2.0	13	100	0	52	38	15	15	30	1.88
931689--931752	32	2.0	33	93	3	112	43	15	12	28	1.83
932503--934978	474	5.2	472	82	4	2767	31	17	13	37	1.89
934795--935165	186	2.0	186	89	2	566	32	18	12	37	1.88
938295--941995	475	7.8	476	86	1	4725	32	18	13	36	1.89
938493--941995	159	22.1	157	65	11	632	32	18	12	35	1.89
938295--941995	951	3.9	953	87	3	4819	32	18	13	36	1.89
947072--951503	471	9.4	473	82	4	4959	31	18	13	35	1.90
952203--952255	19	2.7	20	88	2	72	37	16	13	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952281--952337	19	3.1	19	84	2	71	36	12	15	35	1.85
952321--952347	13	2.1	13	100	0	54	40	14	14	29	1.86
952922--953018	50	2.0	49	87	6	142	26	30	9	32	1.88

Tables:   1   2   3   4   5   6

The End!