genome.fa.s177.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold177
Parameters: 2 7 7 80 10 50 1000
Length:  788481

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142007--142070	26	2.4	26	76	7	67	31	7	10	50	1.66
146347--146779	219	2.0	219	88	3	656	26	18	14	40	1.89
159386--159415	2	15.0	2	92	0	51	53	0	0	46	1.00
160191--160215	12	2.1	12	100	0	50	8	12	0	80	0.92
162787--162820	2	17.5	2	93	6	61	50	0	0	50	1.00
163017--163050	16	2.1	16	89	10	52	29	0	0	70	0.87
163136--163188	23	2.3	25	75	18	60	50	0	0	49	1.00
163540--163575	2	18.0	2	88	0	54	50	2	2	44	1.31
164376--164404	2	14.5	2	100	0	58	51	48	0	0	1.00
165397--165435	21	2.0	20	85	10	53	17	28	23	30	1.97
166123--166160	17	2.2	18	85	4	51	60	2	0	36	1.11
171110--171222	50	2.3	49	89	1	172	25	16	15	41	1.88
171110--171243	49	2.7	50	87	3	182	25	16	16	41	1.88
173629--173745	51	2.3	51	85	7	157	32	23	10	33	1.89
173734--173804	28	2.5	28	86	4	99	22	30	18	28	1.97
173790--173905	51	2.3	51	86	3	153	30	28	7	33	1.85
173597--173934	158	2.1	158	83	5	416	28	26	12	32	1.92
175916--176018	29	3.6	28	69	13	68	50	13	8	27	1.71
176124--176272	29	5.1	29	64	18	76	49	10	11	28	1.71
176124--176320	58	3.4	57	81	6	184	49	12	11	26	1.74
182369--182436	19	3.9	19	78	21	85	35	11	14	38	1.83
182371--182433	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182390--182414	13	1.9	13	100	0	50	36	16	16	32	1.90
182476--182501	13	2.0	13	100	0	52	30	15	15	38	1.88
182456--182522	33	2.0	33	88	0	98	26	14	14	43	1.85
184967--185042	27	2.8	27	88	9	102	22	34	22	21	1.97
185025--185300	52	5.4	51	78	2	273	28	25	13	32	1.93
185234--185406	79	2.2	79	81	2	195	24	29	15	30	1.95
342400--342432	12	2.6	13	85	9	50	63	3	0	33	1.10
347844--347893	26	1.9	26	88	8	75	50	0	4	46	1.20
347883--347923	13	3.2	13	75	25	50	39	2	2	56	1.26
348297--348341	16	2.8	16	79	0	54	57	0	0	42	0.98
353339--353388	22	2.3	21	83	12	66	50	0	0	50	1.00
353841--353888	18	2.6	19	73	6	53	62	2	0	35	1.07
354411--354449	2	19.5	2	94	0	69	48	0	0	51	1.00
354782--354832	12	3.9	12	78	16	57	43	5	11	39	1.66
354788--354844	27	2.1	27	90	0	87	40	5	19	35	1.74
354895--354927	9	3.7	9	95	0	57	45	18	33	3	1.65
359558--359608	12	3.9	12	78	16	57	43	5	11	39	1.66
359564--359620	27	2.1	27	90	0	87	40	5	19	35	1.74
359671--359703	9	3.7	9	95	0	57	45	18	33	3	1.65
361101--361126	5	5.2	5	100	0	52	38	0	0	61	0.96
361618--361642	2	12.5	2	100	0	50	52	0	0	48	1.00
361709--361739	2	15.5	2	93	0	53	54	0	45	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364293--364361	19	4.0	18	75	22	76	37	11	14	36	1.83
364296--364358	32	2.0	32	93	0	108	36	12	15	34	1.86
364315--364339	13	1.9	13	100	0	50	36	16	16	32	1.90
364401--364426	13	2.0	13	100	0	52	30	15	15	38	1.88
364381--364448	34	2.0	33	91	2	109	26	16	11	45	1.81
366780--367231	54	8.6	51	74	13	222	30	25	11	33	1.91
366897--366972	27	2.8	28	89	2	109	23	34	21	21	1.97
366797--367342	160	3.4	157	74	9	480	28	25	12	33	1.93
366824--367232	106	3.9	104	73	11	330	30	25	11	32	1.91
366955--367232	54	5.3	53	85	4	289	29	24	11	34	1.90
367215--367288	28	2.6	28	86	0	94	22	31	18	27	1.98
367246--367449	79	2.6	78	81	3	212	24	27	17	30	1.97
379808--379866	9	6.3	9	81	13	57	86	8	5	0	0.70
379815--379866	11	4.6	11	79	11	61	86	9	3	0	0.69
379808--379866	17	3.3	17	78	19	66	86	8	5	0	0.70
380836--381548	115	6.1	116	82	9	811	25	29	20	24	1.99
380836--381549	176	4.1	176	93	2	1176	25	28	20	24	1.99
382341--382418	33	2.3	34	85	8	106	26	15	14	43	1.85
382375--382400	13	2.0	13	100	0	52	30	15	15	38	1.88
384760--385153	51	7.5	53	71	15	219	30	25	11	32	1.91
384874--384949	27	2.8	28	85	2	100	23	32	21	22	1.98
385142--385211	28	2.5	28	90	0	104	22	35	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384765--385262	264	1.9	265	90	2	795	29	26	12	31	1.93
385167--385399	78	2.9	77	77	6	218	26	27	14	31	1.95
390478--390551	20	3.7	20	78	7	87	39	13	13	33	1.84
390475--390551	40	1.9	40	89	0	118	38	14	12	33	1.84
391158--392052	28	31.2	28	82	5	943	21	18	31	27	1.97
391158--392474	56	23.3	56	83	6	1552	22	18	31	27	1.97
392035--392070	18	2.0	18	94	0	63	13	22	36	27	1.92
392054--392474	111	3.7	112	90	4	634	22	18	31	28	1.97
392053--392473	28	14.9	29	87	6	589	22	18	31	28	1.97
393692--393745	11	4.6	11	80	15	56	1	3	9	85	0.80
393710--393747	16	2.4	16	100	0	76	0	0	10	89	0.49
393703--393747	21	2.2	20	88	11	65	0	2	8	88	0.58
393692--393749	10	6.0	9	75	13	53	1	3	10	84	0.81
407705--407781	20	3.8	21	74	8	61	40	14	11	33	1.82
407705--407781	40	1.9	40	86	0	109	40	14	11	33	1.82
408281--408326	24	1.9	25	91	8	78	45	21	8	23	1.80
408307--408387	27	2.9	28	79	3	101	46	19	9	23	1.80
409732--409786	26	2.1	26	96	0	101	32	23	18	25	1.97
412709--412746	13	2.9	13	100	0	76	36	15	15	31	1.90
412784--412842	21	2.8	21	89	0	91	38	15	8	37	1.78
412862--412990	52	2.5	52	93	0	222	35	17	17	29	1.93
419877--419955	30	2.6	31	75	15	83	78	13	3	3	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419902--419952	9	5.7	9	80	15	61	86	11	0	1	0.66
419902--419953	22	2.4	22	87	9	79	86	11	0	1	0.65
420197--420225	10	2.9	10	100	0	58	93	6	0	0	0.36
421170--421406	32	7.5	32	87	6	322	22	28	16	32	1.96
421367--421675	100	3.1	100	91	2	487	20	33	13	33	1.91
421430--421678	67	3.8	64	77	10	234	20	33	12	32	1.91
421403--421687	33	8.5	33	79	10	283	20	33	13	33	1.91
421694--421920	32	7.0	32	87	4	287	27	32	18	22	1.97
421698--421920	33	6.9	33	87	5	276	27	31	18	22	1.97
421698--421920	65	3.4	64	87	4	270	27	31	18	22	1.97
421927--422579	49	13.8	48	77	10	571	25	23	18	32	1.97
421927--422481	92	6.0	92	88	0	804	25	23	18	32	1.97
422090--422157	21	3.2	21	64	32	54	26	25	19	29	1.98
422180--422247	21	3.2	21	67	19	59	27	25	16	30	1.96
422256--422425	44	3.8	44	79	8	189	26	24	17	31	1.97
423271--423334	32	2.0	33	93	3	112	35	12	17	34	1.87
423270--423353	19	4.7	19	77	18	99	34	11	16	36	1.86
423430--423558	52	2.5	52	89	0	213	36	17	17	29	1.92
425682--425732	27	2.0	26	88	11	79	25	37	15	21	1.93
427021--427066	13	3.5	13	84	0	65	36	6	43	13	1.69
427150--427224	27	2.7	27	81	2	87	46	17	9	26	1.78
429915--429940	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432460--432536	20	3.6	20	77	16	73	42	15	15	25	1.86
434552--434582	15	2.1	15	93	0	53	12	22	16	48	1.80
436386--436430	21	2.1	21	84	8	56	22	20	4	53	1.63
438649--438674	13	2.0	13	100	0	52	30	15	15	38	1.88
440547--440609	33	1.9	33	87	6	92	30	15	22	31	1.95
440714--440741	2	14.0	2	100	0	56	50	0	0	50	1.00
441172--441214	3	14.3	3	100	0	86	32	0	0	67	0.91
441490--441525	18	1.9	19	94	5	65	72	0	0	27	0.85
441488--441524	9	3.9	10	79	13	51	72	0	0	27	0.84
445909--445933	13	1.9	13	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5