genome.fa.s177.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold177
Parameters: 2 7 7 80 10 50 1000
Length:  788481

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446469--446494	2	13.0	2	100	0	52	0	50	0	50	1.00
446903--446944	3	14.0	3	100	0	84	66	0	0	33	0.92
447009--447080	21	3.6	20	75	12	51	48	4	0	47	1.21
447243--447272	15	2.0	15	93	0	51	36	3	0	60	1.14
448298--448341	17	2.4	19	81	7	56	77	2	2	18	0.98
448565--448602	6	6.3	6	93	0	58	0	21	31	47	1.51
449810--449869	20	2.8	21	82	14	61	53	0	0	46	1.00
450670--450701	16	1.9	17	93	6	57	65	12	3	18	1.38
455947--456004	25	2.3	27	79	11	68	36	5	1	56	1.32
456444--456776	58	5.7	58	67	12	139	47	13	11	27	1.77
459592--459637	22	2.1	22	88	8	67	30	26	13	30	1.93
459580--459839	87	3.0	87	87	5	364	31	20	14	33	1.92
459683--459724	22	1.9	22	90	0	66	40	26	7	26	1.81
460725--460757	17	1.9	17	88	11	50	39	0	0	60	0.97
462347--462386	8	4.9	8	82	17	55	87	0	10	2	0.63
462344--462384	15	2.7	15	85	14	57	87	0	9	2	0.62
462344--462388	17	2.7	16	86	6	63	86	0	11	2	0.65
463024--463163	58	2.4	57	82	5	156	30	10	10	48	1.71
463024--463183	59	2.8	58	79	3	171	30	10	10	48	1.71
463269--463397	58	2.2	59	79	6	147	28	9	14	47	1.75
465921--465958	20	1.9	20	94	0	67	31	21	7	39	1.82
466031--466084	19	2.8	20	83	13	76	31	16	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471469--471589	52	2.3	52	97	0	224	28	18	18	34	1.94
471469--471609	52	2.7	51	90	4	212	30	17	18	33	1.94
471598--471622	13	1.9	13	100	0	50	36	16	16	32	1.90
471687--471711	13	1.9	13	100	0	50	32	16	16	36	1.90
471665--471731	33	2.0	33	88	0	98	40	13	11	34	1.81
472339--472369	16	1.9	16	100	0	62	38	19	6	35	1.77
481840--481890	28	1.9	27	84	11	70	35	7	3	52	1.49
484839--484872	13	2.5	13	90	4	50	73	0	26	0	0.83
485947--487744	156	11.5	156	79	7	1563	24	16	20	38	1.92
485951--487741	313	5.7	310	80	7	1662	24	16	20	38	1.92
490851--490876	13	2.0	13	100	0	52	30	15	15	38	1.88
491584--491627	21	2.1	21	83	8	54	25	31	4	38	1.76
493434--493471	13	2.9	13	96	0	67	34	15	18	31	1.92
495531--495561	15	2.1	15	93	0	53	12	22	16	48	1.80
497366--497410	21	2.1	21	84	8	56	22	20	4	53	1.63
498002--498027	12	2.2	12	100	0	52	34	34	0	30	1.58
500633--500667	13	2.7	13	86	0	52	34	14	14	37	1.86
507434--507458	13	1.9	13	100	0	50	32	16	16	36	1.90
507874--507902	14	2.1	14	100	0	58	41	13	20	24	1.89
510585--510647	19	3.6	19	74	24	75	34	12	17	34	1.88
510604--510628	13	1.9	13	100	0	50	36	16	16	32	1.90
510585--510654	32	2.2	32	97	0	131	34	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510700--510727	13	2.2	13	100	0	56	28	14	17	39	1.89
513884--513932	20	2.5	20	90	6	73	42	14	16	26	1.86
513964--514016	21	2.7	20	82	8	72	33	15	13	37	1.86
516771--517418	166	3.9	165	81	7	658	51	8	10	28	1.66
520824--520850	13	2.1	13	100	0	54	29	14	14	40	1.86
520835--520890	19	2.9	19	83	2	76	30	19	14	35	1.91
520935--520964	13	2.3	13	94	0	51	33	13	13	40	1.83
520919--520985	33	2.0	33	88	5	100	32	11	19	35	1.88
524855--524910	19	2.9	19	89	2	85	32	19	12	35	1.89
524939--525037	20	5.7	19	67	30	78	32	14	19	34	1.91
524939--525038	33	3.0	33	89	0	164	32	14	19	35	1.91
524990--525014	13	1.9	13	100	0	50	36	8	16	40	1.77
527707--527779	20	3.6	20	81	3	101	35	13	19	31	1.91
527725--527800	21	3.7	21	80	3	100	42	11	17	28	1.84
527707--527800	41	2.3	41	98	0	179	39	12	18	29	1.88
527839--527864	13	2.0	13	100	0	52	38	15	15	30	1.88
531928--531966	15	2.6	15	91	0	60	51	15	20	12	1.76
533972--534050	20	3.7	21	75	15	72	26	13	15	44	1.84
534037--534075	13	3.0	13	96	0	69	30	17	15	35	1.91
536373--536445	20	3.6	20	81	3	101	35	13	19	31	1.91
536391--536466	21	3.7	21	80	3	100	42	11	17	28	1.84
536373--536466	41	2.3	41	98	0	179	39	12	18	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536505--536530	13	2.0	13	100	0	52	38	15	15	30	1.88
537505--537546	20	2.0	21	86	4	59	47	4	7	40	1.52
539895--539933	3	12.7	3	94	5	69	64	2	0	33	1.08
544953--545014	16	3.5	17	78	14	54	67	0	1	30	1.00
544971--545014	20	2.3	18	88	7	61	65	0	2	31	1.05
544974--545063	32	2.7	34	82	16	86	57	0	4	37	1.19
544995--545063	32	2.1	33	89	7	106	55	0	5	39	1.24
545058--545139	26	3.1	26	72	10	85	56	0	0	43	0.99
545061--545142	16	4.8	16	68	19	58	57	0	0	42	0.98
545686--545728	15	2.8	16	82	10	63	34	0	0	65	0.93
547509--547552	19	2.3	19	100	0	88	18	6	20	54	1.66
547509--547557	19	2.6	19	93	3	73	24	6	18	51	1.69
548280--548312	2	16.5	2	93	0	57	48	3	0	48	1.17
552967--553034	31	2.2	32	94	5	129	23	29	14	32	1.94
553737--554138	187	2.1	188	87	1	583	39	8	8	42	1.67
554143--554184	14	2.9	15	75	7	50	38	0	0	61	0.96
558752--558867	59	2.0	57	88	3	169	40	16	8	34	1.79
561539--561660	2	61.0	2	88	0	64	36	2	13	47	1.57
561540--561620	20	4.1	20	96	0	144	34	2	14	48	1.58
566074--566197	44	2.8	44	93	0	212	23	20	14	41	1.89
570804--570927	44	2.8	44	87	0	176	25	15	13	45	1.82
574804--574830	13	2.1	13	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578071--578095	2	12.5	2	100	0	50	48	0	0	52	1.00
579454--579489	13	2.6	13	91	8	54	52	2	0	44	1.15
579471--579508	18	2.2	17	90	4	58	60	0	2	36	1.11
584997--585041	3	15.0	3	100	0	90	33	0	0	66	0.92
588055--588086	16	2.0	16	100	0	64	43	12	12	31	1.80
589930--589960	10	3.2	10	95	4	55	45	6	29	19	1.75
590985--591015	2	15.5	2	93	0	53	54	0	45	0	0.99
591362--591401	18	2.2	19	86	4	55	47	5	0	47	1.24
591414--591445	14	2.3	14	94	0	55	50	0	0	50	1.00
591451--591491	5	8.4	5	79	15	50	34	0	0	65	0.93
591433--591512	28	2.8	26	78	17	88	40	0	0	60	0.97
591451--591513	23	2.8	24	85	9	87	38	0	0	61	0.96
591424--591514	16	6.3	15	74	24	72	42	0	0	57	0.99
593242--593272	16	1.9	16	93	0	53	45	0	0	54	0.99
596485--596558	24	2.8	28	82	16	111	59	0	0	40	0.97
596626--596668	22	1.9	23	90	4	70	48	6	0	44	1.29
596528--596770	121	2.0	122	99	0	479	50	4	0	44	1.26
596839--596868	14	2.1	14	93	0	51	70	0	0	30	0.88
596852--596895	22	2.0	22	82	8	54	59	2	0	38	1.10
597084--597122	3	13.0	3	100	0	78	66	0	0	33	0.92
597266--597327	14	4.4	14	77	20	58	56	4	0	38	1.21
597272--597325	28	1.9	28	85	7	74	55	5	0	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597401--597431	2	15.5	2	93	0	53	48	0	3	48	1.17
604510--604537	3	9.3	3	100	0	56	67	32	0	0	0.91
606009--606229	34	6.5	33	81	9	248	40	25	7	25	1.82
606011--606229	68	3.2	67	83	3	278	40	25	7	26	1.82
606009--606229	102	2.2	101	86	1	334	40	25	7	25	1.82
608838--608910	36	2.0	36	100	0	146	38	19	10	31	1.86
608626--609154	281	1.9	281	99	0	1049	33	22	13	30	1.93
610916--611135	34	6.5	33	82	9	264	40	26	7	24	1.82
610918--611135	68	3.2	67	85	3	294	40	26	7	24	1.82
610916--611135	102	2.2	101	89	1	350	40	26	7	24	1.82

Tables:   1   2   3   4   5