genome.fa.s177.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold177
Parameters: 2 7 7 80 10 50 1000
Length:  788481

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 508 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727876--727903	13	2.2	13	100	0	56	28	14	17	39	1.89
732019--732043	13	1.9	13	100	0	50	36	16	16	32	1.90
732105--732162	13	3.9	13	73	26	53	32	17	13	36	1.89
732118--732183	20	3.7	20	73	26	83	34	18	12	34	1.88
732084--732182	33	3.0	33	97	1	182	35	17	12	35	1.87
741397--741426	13	2.3	13	94	0	51	36	10	16	36	1.82
741374--741443	33	2.1	32	84	10	88	34	17	14	34	1.90
741499--741569	31	2.3	31	90	2	106	43	14	15	26	1.85
746148--746203	27	2.1	26	83	9	69	48	5	3	42	1.43
753241--753558	57	5.5	57	77	9	206	24	11	15	48	1.77
753350--753540	57	3.3	56	82	7	217	26	10	17	45	1.81
755242--755300	26	2.2	27	82	8	68	50	6	1	40	1.39
757027--757068	15	2.9	15	82	3	50	57	2	0	40	1.12
760282--760337	25	2.1	26	80	9	60	57	0	1	41	1.09
762447--762581	24	5.3	25	71	11	62	57	2	3	35	1.31
763166--763225	19	3.2	19	84	11	79	43	0	0	56	0.99
769879--769916	12	3.0	13	88	7	60	39	7	21	31	1.82
772121--772159	15	2.4	16	83	12	53	79	5	2	12	1.00
772634--772686	21	2.3	24	78	18	60	66	9	20	3	1.37
776086--776160	20	3.8	20	73	7	62	44	9	13	33	1.76
776671--776726	28	1.9	30	82	7	71	48	8	30	12	1.72
777037--777149	59	1.9	59	87	0	163	46	31	16	5	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
782082--782146	33	2.0	33	87	0	94	35	12	12	40	1.80
782207--782331	52	2.4	52	97	0	232	36	18	17	27	1.93
783396--783468	20	3.6	20	78	9	67	31	16	12	39	1.85
783416--783471	20	2.8	20	83	5	69	32	16	12	39	1.85
785900--785925	13	2.0	13	100	0	52	38	15	15	30	1.88
788003--788033	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5

The End!