genome.fa.s1873.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1873
Parameters: 2 7 7 80 10 50 1000
Length:  405709

Tables:   1   2   3   4   

This is table  3  of  4  ( 402 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267835--267897	19	3.6	19	74	24	75	34	12	17	34	1.88
267854--267911	13	4.0	13	74	23	53	34	15	17	32	1.91
267833--267910	32	2.4	32	95	0	138	35	14	16	33	1.89
274981--275017	12	2.8	14	84	12	51	81	18	0	0	0.70
276207--276737	30	17.2	30	77	12	436	22	29	14	33	1.94
276204--276909	30	22.2	33	76	10	394	21	29	13	34	1.93
276207--276737	91	5.7	90	76	11	434	22	29	14	33	1.94
276207--276804	124	4.8	123	76	11	508	22	29	14	33	1.94
276716--277367	34	20.5	34	80	11	451	20	31	12	35	1.90
276910--277270	27	12.2	27	75	16	290	20	31	12	34	1.90
276773--277367	153	3.8	156	79	12	582	20	31	12	35	1.89
276909--277269	87	4.1	87	72	18	259	20	31	12	34	1.90
277795--277884	20	4.5	20	77	15	96	27	15	14	42	1.86
277793--277884	40	2.3	40	81	7	107	29	15	14	41	1.86
280264--280432	50	3.4	51	85	2	234	30	21	11	35	1.90
281492--281571	27	3.0	27	86	0	115	25	32	12	30	1.92
281585--281721	29	4.6	30	81	9	147	30	29	19	19	1.97
281585--281721	59	2.3	57	83	7	159	30	29	19	19	1.97
281744--282078	48	7.5	48	72	18	314	25	26	20	27	1.99
281731--282427	87	8.0	87	92	1	1101	26	25	19	28	1.99
282356--282688	52	6.6	50	78	9	293	25	25	15	33	1.95
282358--282684	100	3.2	100	81	6	356	25	25	15	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283131--283437	28	10.3	32	78	8	196	20	19	30	29	1.97
283134--283287	32	5.0	31	79	7	152	18	20	29	31	1.96
283131--283307	92	1.9	92	86	2	248	18	19	30	31	1.96
283274--283536	57	4.7	56	79	7	250	25	15	29	28	1.96
283274--283539	28	9.5	28	79	8	222	26	15	29	28	1.96
284847--284871	13	1.9	13	100	0	50	32	16	16	36	1.90
294895--294945	22	2.5	19	77	17	57	13	41	33	11	1.81
294903--294953	22	2.3	22	93	0	84	13	43	31	11	1.80
297366--297391	13	2.0	13	100	0	52	30	15	15	38	1.88
298039--298157	58	2.1	58	96	0	220	41	8	22	27	1.83
298389--298441	13	4.1	13	81	18	74	30	18	15	35	1.92
298383--298435	26	2.0	26	100	0	106	32	22	15	30	1.94
307756--307793	20	1.9	19	89	5	58	36	13	18	31	1.89
309456--309486	3	10.3	3	92	0	53	35	0	35	29	1.58
311488--311528	21	2.0	21	85	9	57	39	12	9	39	1.76
311565--311621	21	2.8	20	81	5	69	40	15	14	29	1.87
311609--311745	53	2.6	53	95	1	238	37	18	17	26	1.93
311777--311900	21	5.8	21	96	1	212	29	23	9	37	1.86
311943--311981	13	3.0	13	92	0	69	30	15	17	35	1.91
317446--317488	21	2.0	22	86	4	61	32	4	20	41	1.73
318042--318105	32	2.0	32	85	11	87	29	15	12	42	1.84
318070--318126	19	2.9	19	84	2	78	33	15	15	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318172--318223	13	4.5	13	73	26	62	32	13	17	36	1.89
318155--318223	33	2.1	32	89	10	104	30	14	18	36	1.91
322517--322573	19	2.9	19	86	5	69	36	17	14	31	1.89
322539--322603	32	2.0	33	87	3	96	41	16	15	26	1.88
323119--323164	18	2.6	18	92	0	74	32	15	0	52	1.43
325005--325031	14	1.9	14	100	0	54	40	22	14	22	1.90
331187--331250	33	1.9	33	87	12	96	31	15	14	39	1.87
331302--331328	13	2.1	13	100	0	54	40	14	14	29	1.86
331789--331897	53	2.1	53	82	6	132	33	18	22	26	1.97
331999--332207	50	4.2	50	78	2	231	33	22	21	23	1.97
332037--332308	100	2.7	101	81	2	271	32	20	21	25	1.98
332338--332584	50	5.0	50	75	8	229	32	19	21	27	1.97
332336--332587	99	2.6	98	80	8	253	33	19	20	26	1.97
333280--333359	21	3.9	21	73	3	72	38	13	5	42	1.66
333280--333336	20	2.8	21	78	5	71	40	12	5	42	1.65
334588--334626	19	2.0	21	85	10	55	17	7	23	51	1.71
336250--336295	20	2.2	20	88	3	65	41	10	19	28	1.85
336367--336491	52	2.4	50	75	15	128	28	16	12	43	1.83
340223--340813	79	7.5	78	78	5	551	27	24	14	33	1.94
340223--340813	237	2.5	238	81	1	677	27	24	14	33	1.94
340224--340792	159	3.6	157	79	6	596	27	24	13	33	1.94
343342--343370	15	1.9	15	100	0	58	34	31	0	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343508--343585	31	2.6	30	76	11	77	25	30	11	32	1.91
343603--343823	33	7.0	33	79	9	239	23	29	10	36	1.88
343603--343795	98	2.0	94	90	6	298	22	29	10	37	1.88
343830--344129	130	2.3	130	80	5	338	29	32	16	22	1.95
343827--344129	33	9.3	32	77	8	283	30	32	16	21	1.95
344172--344374	52	3.9	51	74	3	174	27	21	13	37	1.91
345902--345929	13	2.2	13	100	0	56	42	14	14	28	1.84
346808--346859	19	2.7	20	87	6	79	28	13	15	42	1.85
347892--347958	33	2.0	33	88	0	98	34	11	13	40	1.81
347912--347936	13	1.9	13	100	0	50	36	16	16	32	1.90
348001--348025	13	1.9	13	100	0	50	32	16	16	36	1.90
348034--348154	52	2.3	52	97	0	224	34	18	18	28	1.94
350070--350095	13	2.0	13	100	0	52	30	23	15	30	1.95
352175--352205	15	2.1	15	93	0	53	12	22	16	48	1.80
355695--355720	13	2.0	13	100	0	52	30	15	15	38	1.88
355675--355738	32	2.0	33	90	3	103	28	14	15	42	1.86
361919--361943	13	1.9	13	100	0	50	12	0	0	88	0.53
362503--362550	22	2.2	22	88	0	69	16	18	43	20	1.88
362509--362551	22	2.0	22	95	0	77	16	16	41	25	1.88
363481--363525	8	5.3	9	86	7	60	13	0	6	80	0.91
363481--363530	16	3.1	17	88	11	70	14	0	8	78	0.97
363496--363530	8	4.4	8	86	13	54	11	0	11	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366700--366756	19	2.9	19	89	2	87	33	21	14	31	1.92
366690--366716	13	2.1	13	100	0	54	29	14	14	40	1.86
366805--366838	13	2.6	13	95	0	59	23	11	23	41	1.87
369598--369635	16	2.3	17	86	4	51	44	23	5	26	1.74
369738--370272	34	16.8	34	88	6	602	20	34	14	29	1.93
369797--370270	121	3.7	121	88	7	651	20	35	14	29	1.92
370222--370324	54	2.0	51	86	9	145	20	35	14	29	1.92
370273--370416	33	4.1	35	85	11	188	20	35	11	32	1.88
370273--370416	35	4.1	35	84	9	186	20	35	11	32	1.88
370470--370903	43	9.0	51	86	9	483	25	24	17	32	1.97
370572--370888	92	3.4	91	87	6	410	25	23	18	31	1.97
370733--370800	21	3.2	21	62	25	52	26	27	17	27	1.98
370749--370819	21	3.2	24	61	19	62	26	25	19	28	1.99
370754--370822	22	3.2	22	62	25	56	26	26	17	30	1.97
370795--371185	170	2.3	170	81	7	425	23	26	14	35	1.93
371721--371787	33	2.0	33	88	0	98	34	11	13	40	1.81
371741--371765	13	1.9	13	100	0	50	36	16	16	32	1.90
371828--371852	13	1.9	13	100	0	50	32	16	16	36	1.90
371861--371985	52	2.4	52	94	2	216	34	18	17	29	1.94
378674--378700	14	1.9	14	100	0	54	81	0	11	7	0.87
378937--379007	1	71.0	1	71	0	52	85	5	8	0	0.72
379820--379857	16	2.3	17	86	4	51	44	23	5	26	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380019--380525	34	15.8	34	90	6	653	20	35	14	29	1.92
379960--380498	34	17.1	30	88	6	493	20	35	14	29	1.93
379962--380496	121	4.2	128	88	8	690	20	34	14	29	1.93
379962--380496	68	8.5	62	84	10	608	20	34	14	29	1.93
380477--380579	54	2.0	51	88	9	154	20	33	15	30	1.94
380528--380671	33	4.1	35	82	11	170	21	34	10	33	1.88
380528--380671	35	4.1	35	81	9	168	21	34	10	33	1.88
380409--380646	122	2.0	119	85	8	322	20	34	13	32	1.91
380657--380725	33	2.0	35	91	5	115	27	36	15	20	1.93
380876--381192	43	7.1	43	84	8	409	25	24	18	31	1.98

Tables:   1   2   3   4