genome.fa.s1873.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1873
Parameters: 2 7 7 80 10 50 1000
Length:  405709

Tables:   1   2   3   4   

This is table  4  of  4  ( 402 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380826--381191	92	4.0	92	92	2	582	24	25	18	31	1.98
381080--381147	21	3.2	21	62	25	52	26	27	17	27	1.98
381096--381166	21	3.2	24	61	19	62	26	25	19	28	1.99
381101--381169	22	3.2	22	62	25	56	26	26	17	30	1.97
381145--381283	52	2.6	52	83	4	170	25	24	15	34	1.95
381596--381633	16	2.3	17	86	4	51	44	23	5	26	1.74
381794--382273	34	14.9	34	90	6	643	20	36	13	29	1.91
381736--382236	34	15.7	31	89	5	504	21	35	14	28	1.93
382223--382325	54	2.0	51	86	9	145	20	35	14	29	1.92
382274--382417	33	4.1	35	85	11	188	20	35	11	32	1.88
382274--382417	35	4.1	35	84	9	186	20	35	11	32	1.88
382471--382961	52	10.0	51	83	9	475	25	24	16	33	1.96
382622--382889	43	5.9	43	84	9	311	25	23	18	32	1.97
382573--382889	92	3.4	91	87	6	401	25	23	18	32	1.97
382734--382801	21	3.2	21	62	25	52	26	27	17	27	1.98
382750--382820	21	3.2	24	61	19	62	26	25	19	28	1.99
382755--382823	22	3.2	22	62	25	56	26	26	17	30	1.97
383720--383777	20	3.0	20	84	2	73	31	10	12	46	1.74
383816--383840	13	1.9	13	100	0	50	32	16	16	36	1.90
383849--383973	52	2.4	52	95	0	223	36	18	17	28	1.94
390662--390690	15	1.9	15	100	0	58	82	0	10	6	0.83
390939--390993	12	4.7	11	84	10	74	85	5	9	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390927--391001	25	2.9	26	78	11	91	82	9	8	0	0.84
390939--390993	23	2.3	23	85	11	76	85	5	9	0	0.74
391806--391843	16	2.3	17	86	4	51	44	23	5	26	1.74
391946--392633	34	21.8	34	88	7	780	20	35	14	29	1.93
391946--392602	121	5.2	121	90	5	895	20	35	14	29	1.93
392583--392685	54	2.0	51	88	9	154	21	35	14	28	1.93
392515--392752	122	2.0	119	86	4	334	20	34	13	31	1.91
392634--392757	33	3.5	35	85	13	166	19	32	12	36	1.88
392763--392831	33	2.0	35	94	5	124	26	36	17	20	1.94
392842--393297	49	9.5	49	83	9	507	24	25	17	32	1.97
392982--393255	43	6.1	44	79	10	311	25	24	18	32	1.97
392932--393297	92	3.9	92	91	1	561	25	24	17	32	1.97
393208--393349	52	2.7	52	82	4	158	27	24	14	33	1.94
394131--394197	33	2.0	33	88	0	98	34	11	13	40	1.81
394151--394175	13	1.9	13	100	0	50	36	16	16	32	1.90
394238--394262	13	1.9	13	100	0	50	32	16	16	36	1.90
394271--394395	52	2.4	52	95	0	223	36	18	17	28	1.94
400586--400623	13	2.9	13	96	0	67	39	15	13	31	1.86
403229--403283	20	2.8	20	86	5	67	38	12	18	30	1.88
404588--404629	15	2.8	16	82	10	52	28	14	2	54	1.52

Tables:   1   2   3   4

The End!