genome.fa.s189.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold189
Parameters: 2 7 7 80 10 50 1000
Length:  2243555

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1067 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245678--245866	61	3.1	60	67	17	163	11	45	38	4	1.61
245615--245889	123	2.2	123	94	1	480	11	45	37	5	1.62
249849--249877	3	9.7	3	100	0	58	68	0	0	31	0.89
250768--251160	196	2.0	196	100	0	786	55	8	9	26	1.61
252713--252741	14	2.0	15	93	6	51	55	0	0	44	0.99
255805--255853	6	8.2	6	90	0	62	42	40	16	0	1.48
255807--255855	12	4.1	12	89	0	71	42	40	16	0	1.48
259998--260026	2	14.5	2	100	0	58	48	0	0	51	1.00
266805--266861	17	3.2	18	80	9	64	57	0	1	40	1.09
266913--266937	13	1.9	13	100	0	50	56	0	8	36	1.29
267310--267363	11	5.0	11	75	18	51	55	1	0	42	1.10
267309--267356	21	2.2	22	82	10	64	56	0	0	43	0.99
267687--267758	37	1.9	38	85	2	101	43	4	13	38	1.64
267864--267924	31	1.9	33	86	6	90	50	0	1	47	1.10
269683--269722	21	2.0	20	90	5	62	50	0	0	50	1.00
282061--282169	57	1.9	57	81	7	132	43	0	1	55	1.10
285115--285144	5	6.0	5	96	0	51	56	0	43	0	0.99
285611--285635	2	12.5	2	100	0	50	0	48	0	52	1.00
293261--293299	17	2.3	17	90	0	60	23	0	0	76	0.78
293895--293939	14	3.2	14	81	6	56	53	2	2	42	1.25
294687--294734	2	24.0	2	82	0	60	41	0	0	58	0.98
294889--294932	23	1.9	23	86	9	63	40	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295325--295390	17	4.3	14	72	23	53	62	1	1	34	1.14
295330--295396	13	4.8	13	74	15	53	59	0	1	38	1.06
295310--295398	43	2.0	43	82	8	106	59	1	1	38	1.12
296124--296166	23	1.9	23	85	4	61	44	0	0	55	0.99
296553--296603	20	2.4	21	75	18	52	45	0	1	52	1.12
297059--297085	2	13.5	2	100	0	54	0	0	48	51	1.00
299431--299457	2	13.5	2	100	0	54	48	0	0	51	1.00
300050--300092	12	3.5	12	77	3	50	46	0	2	51	1.13
301112--301152	16	2.6	15	88	7	55	46	0	0	53	1.00
301130--301176	21	2.4	19	79	13	51	53	0	0	46	1.00
301236--301274	17	2.2	19	90	9	64	48	0	0	51	1.00
301236--301271	18	2.1	17	89	5	54	47	0	0	52	1.00
302275--302306	2	16.0	2	100	0	64	50	0	0	50	1.00
303059--303085	2	13.5	2	100	0	54	48	0	51	0	1.00
308328--308393	2	34.0	2	78	6	55	40	1	9	48	1.44
308326--308392	20	3.2	20	81	8	89	38	1	10	49	1.46
308330--308388	22	2.7	22	84	10	84	40	1	8	49	1.43
315245--315273	7	4.3	7	95	4	51	0	10	0	89	0.48
315646--315674	2	14.5	2	100	0	58	48	0	0	51	1.00
315800--315854	22	2.5	22	87	0	83	58	0	0	41	0.98
325241--325334	35	2.7	35	84	0	125	22	22	18	37	1.94
325449--325486	17	2.3	16	86	13	51	18	2	7	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331621--331669	19	2.8	17	80	14	55	38	4	2	55	1.31
332778--333139	180	2.0	180	92	2	602	22	22	16	38	1.93
336365--336390	7	3.7	7	100	0	52	88	0	11	0	0.52
348116--348145	2	15.5	2	93	6	53	50	0	0	50	1.00
348711--348744	2	17.0	2	93	0	59	52	0	0	47	1.00
359893--359935	22	2.0	21	86	4	59	55	2	0	41	1.12
373349--373393	10	4.3	11	83	8	58	35	0	0	64	0.94
373349--373702	21	16.7	21	67	16	144	37	2	4	55	1.35
376055--376099	2	23.0	2	90	4	74	48	0	2	48	1.13
376665--376729	31	2.1	31	97	0	121	61	12	13	12	1.57
389979--390028	25	2.0	25	96	0	91	28	6	32	34	1.81
397182--397206	7	3.6	7	100	0	50	40	12	0	48	1.40
397672--397728	26	2.2	26	81	15	64	52	0	1	45	1.11
397635--397727	32	2.9	32	69	15	75	53	1	2	43	1.19
398679--398705	3	9.0	3	100	0	54	66	0	0	33	0.92
401912--401942	6	5.3	6	92	7	55	35	0	0	64	0.94
412670--412703	2	17.0	2	100	0	68	50	0	0	50	1.00
423942--424002	30	2.0	30	96	0	113	18	31	9	40	1.83
428655--428691	18	2.2	16	90	9	56	51	0	0	48	1.00
428718--428756	20	2.0	20	90	5	62	28	0	0	71	0.86
428737--428761	8	3.1	8	100	0	50	36	0	0	64	0.94
434876--434900	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439009--439044	2	18.0	2	100	0	72	50	0	0	50	1.00
446542--446579	20	1.9	20	94	0	67	36	10	10	42	1.74
446544--446587	20	2.2	20	83	0	52	40	6	9	43	1.63
446875--446907	3	11.0	3	100	0	66	33	0	0	66	0.92
452062--452092	2	15.5	2	100	0	62	51	0	0	48	1.00
452393--452463	31	2.3	30	88	7	99	63	0	0	36	0.95
454772--454842	35	2.0	35	83	10	90	53	0	2	43	1.15
456279--456309	15	2.1	14	94	5	53	90	0	9	0	0.46
466814--466883	30	2.3	30	90	4	106	41	4	0	54	1.20
476306--476364	28	2.0	31	87	9	88	64	0	3	32	1.10
476377--476460	16	4.9	16	70	25	57	55	3	0	40	1.17
477764--477835	36	2.0	34	86	8	81	50	0	0	50	1.00
478119--478237	22	5.4	22	64	23	63	61	0	0	37	1.02
478152--478189	20	1.9	19	89	5	58	55	0	0	44	0.99
483508--483544	14	2.6	15	83	12	51	56	0	0	43	0.99
483718--483753	3	12.0	3	100	0	72	33	0	0	66	0.92
485199--485228	2	15.0	2	100	0	60	50	0	0	50	1.00
490222--490248	14	1.9	14	100	0	54	0	18	0	81	0.69
490773--490804	15	2.1	15	94	0	55	28	21	25	25	1.99
493248--493293	18	2.6	18	85	0	65	41	47	2	8	1.46
494465--494503	6	6.2	6	85	8	51	53	0	0	46	1.00
496151--496182	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499386--499418	13	2.7	12	90	9	57	51	0	0	48	1.00
503065--503474	204	2.0	205	91	0	669	35	15	16	32	1.90
504116--504239	35	3.3	38	79	10	137	51	7	7	33	1.57
504403--504466	32	2.0	32	82	11	78	62	1	4	31	1.25
505625--505699	38	2.0	38	84	5	98	29	1	1	68	1.06
505664--505689	12	2.2	12	100	0	52	26	0	0	73	0.84
505624--505689	19	3.5	19	74	14	64	28	1	1	68	1.08
510334--510367	17	1.9	18	88	5	52	73	5	11	8	1.24
510381--510413	16	2.0	17	88	5	50	57	0	15	27	1.38
510827--510875	25	1.9	26	87	4	73	53	0	0	46	1.00
511185--511210	2	13.0	2	100	0	52	50	0	0	50	1.00
514055--514137	28	3.1	27	80	13	82	32	1	2	63	1.15
516559--516604	22	2.0	24	83	12	60	43	0	4	52	1.21
516605--516640	17	2.1	17	89	0	54	66	0	0	33	0.92
518076--518104	15	1.9	15	100	0	58	86	0	0	13	0.58
523792--523846	22	2.5	22	72	3	56	14	0	21	63	1.30
527324--527356	2	16.5	2	93	0	57	0	45	0	54	0.99
532502--532535	2	17.5	2	87	6	52	50	2	0	47	1.16
532505--532540	17	2.1	17	89	0	54	50	2	2	44	1.31
538809--538842	15	2.3	15	89	0	50	5	17	14	61	1.52
540857--540898	17	2.5	17	84	7	59	40	0	0	59	0.97
540886--540936	20	2.6	21	76	20	56	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543747--543822	27	2.8	26	82	9	73	59	0	0	40	0.98
543785--543827	23	2.0	23	86	9	63	60	0	2	37	1.10
545823--545866	11	3.9	11	80	16	54	50	0	0	50	1.00
545821--545866	6	8.0	6	77	18	53	50	0	0	50	1.00
545821--545867	17	2.8	17	83	6	60	48	0	0	51	1.00
545919--545977	26	2.3	26	80	11	68	42	0	0	57	0.98
545987--546028	14	2.9	15	86	13	61	50	0	0	50	1.00
551441--551665	54	4.1	54	90	4	353	29	22	26	21	1.99
551441--551665	111	2.1	108	90	4	353	29	22	26	21	1.99
557661--557694	6	5.7	6	89	0	50	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9