genome.fa.s189.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold189
Parameters: 2 7 7 80 10 50 1000
Length:  2243555

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1067 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757591--757659	25	2.8	25	81	14	81	63	0	0	36	0.94
757615--757667	25	2.1	25	82	6	63	60	0	1	37	1.08
758738--758774	2	19.0	2	94	5	67	48	0	0	51	1.00
767837--767869	10	3.4	10	87	8	50	87	0	12	0	0.53
768362--768392	2	15.5	2	100	0	62	51	0	48	0	1.00
771160--771184	2	12.5	2	100	0	50	48	0	0	52	1.00
771641--771668	2	14.0	2	100	0	56	50	0	0	50	1.00
782810--782849	21	1.9	21	90	10	64	57	5	2	35	1.34
782980--783031	21	2.2	24	83	12	65	57	3	0	38	1.17
785394--785425	2	16.0	2	100	0	64	0	50	0	50	1.00
788276--788309	2	17.0	2	100	0	68	50	0	0	50	1.00
788419--788481	10	6.6	10	70	17	53	34	0	0	65	0.93
788419--788463	19	2.5	17	80	16	54	37	0	0	62	0.96
788431--788481	20	2.4	21	80	6	59	35	0	0	64	0.94
789871--789921	19	2.7	17	80	19	57	41	0	0	58	0.98
789918--789947	12	2.5	12	88	0	51	36	0	0	63	0.95
789900--789952	27	2.0	26	81	3	61	39	0	0	60	0.97
790642--790669	3	9.3	3	100	0	56	32	0	0	67	0.91
791359--791410	17	3.1	17	75	10	52	55	0	0	44	0.99
791350--791411	26	2.3	27	83	8	74	56	0	0	43	0.99
791358--791411	27	2.0	27	89	7	83	53	0	0	46	1.00
791366--791424	17	3.5	17	77	13	59	55	0	1	42	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791350--791414	27	2.4	28	85	7	82	56	0	0	43	0.99
800679--800719	21	2.0	20	90	4	64	56	0	0	43	0.99
800677--800722	23	2.0	23	83	8	58	56	0	0	43	0.99
806835--806868	2	17.0	2	87	0	50	47	2	2	47	1.32
811674--811706	2	16.5	2	100	0	66	51	0	0	48	1.00
813249--813313	27	2.4	27	82	2	78	32	6	13	47	1.68
813398--813444	13	3.6	13	77	11	51	19	38	6	36	1.77
817578--817643	27	2.4	27	87	0	87	27	10	16	45	1.80
817605--817674	24	2.8	24	72	14	61	24	10	20	45	1.81
817730--817773	13	3.5	12	81	9	52	20	40	6	31	1.79
820301--820349	13	3.8	13	86	0	71	28	8	42	20	1.80
820289--820350	26	2.4	26	78	5	72	33	6	40	19	1.77
820401--820446	24	1.9	24	86	8	67	45	21	8	23	1.80
820410--820505	27	3.7	27	83	4	99	45	18	11	23	1.82
824862--824908	13	3.6	13	85	0	67	29	8	42	19	1.80
824997--825064	27	2.5	27	73	0	64	50	14	7	27	1.70
828954--828983	3	10.3	3	92	7	53	70	0	0	30	0.88
833212--833257	21	2.1	22	88	4	67	21	32	17	28	1.96
835718--835751	13	2.5	13	90	4	50	32	5	44	17	1.73
835837--835903	27	2.5	26	80	7	80	52	10	5	31	1.60
836097--836134	11	3.5	11	85	7	51	7	7	2	81	0.96
836434--836482	24	2.0	26	88	8	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837289--837462	84	2.0	85	84	6	228	31	14	10	43	1.79
838017--838071	21	2.6	22	77	8	60	47	3	1	47	1.30
839325--839357	3	11.3	3	93	6	59	69	0	0	30	0.88
840944--840980	2	18.5	2	100	0	74	48	0	0	51	1.00
842485--842543	28	2.1	27	81	9	66	32	8	5	54	1.53
842882--842958	35	2.2	35	80	11	88	44	2	1	51	1.23
844032--844061	13	2.2	14	94	5	53	66	0	3	30	1.07
844927--844997	27	2.6	28	88	6	101	25	5	22	46	1.73
849486--849556	27	2.6	28	88	6	101	22	5	25	46	1.73
851671--851709	2	19.5	2	100	0	78	0	51	0	48	1.00
851711--851735	2	12.5	2	100	0	50	52	0	0	48	1.00
852257--852379	44	2.8	43	91	3	201	41	16	18	23	1.90
857034--857149	44	2.7	44	93	1	198	37	15	21	25	1.92
857511--857546	17	2.1	18	89	5	56	36	0	0	63	0.94
861275--861329	18	3.3	18	72	25	57	45	0	0	54	0.99
861271--861334	32	2.0	33	87	3	94	48	0	0	51	1.00
861266--861347	32	2.9	27	72	19	67	47	1	0	51	1.08
861524--861641	34	3.5	34	82	5	150	26	5	26	41	1.78
861946--862002	19	3.0	19	89	0	87	29	22	15	31	1.95
866074--866257	34	5.5	34	84	3	230	25	7	27	40	1.81
866074--866257	68	2.7	66	89	3	269	25	7	27	40	1.81
866816--866864	20	2.5	20	81	15	59	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870190--870229	2	20.0	2	94	0	71	50	2	0	47	1.14
873934--873969	1	36.0	1	88	0	54	2	2	0	94	0.37
874624--874687	16	4.4	14	72	16	58	40	3	0	56	1.15
877963--878034	27	2.7	26	80	8	81	31	4	16	47	1.66
878114--878158	13	3.5	13	81	6	56	15	42	6	35	1.73
880608--880653	21	2.1	22	84	4	58	32	17	28	21	1.96
881719--881816	27	3.8	26	77	7	92	23	8	21	46	1.77
883635--883808	84	2.0	85	84	6	228	31	14	10	43	1.79
884374--884428	21	2.6	22	77	8	60	47	3	1	47	1.30
885682--885723	3	14.3	3	95	5	77	69	0	0	30	0.89
887880--887924	17	2.6	18	74	19	51	4	17	0	77	0.92
888643--888825	34	5.4	34	86	0	251	26	7	26	39	1.83
889129--889185	19	3.0	19	94	0	96	33	17	15	33	1.92
893258--893442	34	5.5	34	88	0	264	25	7	26	40	1.82
894825--894866	17	2.5	17	84	0	57	38	4	2	54	1.34
894930--894984	21	2.6	22	77	8	60	47	3	1	47	1.30
903028--903188	84	1.9	83	85	5	218	32	11	10	45	1.74
903647--903678	16	2.0	16	93	0	55	40	3	0	56	1.15
904552--904590	18	2.1	19	85	4	53	58	5	5	30	1.41
905126--905155	15	2.0	15	93	0	51	40	3	0	56	1.16
907003--907060	22	2.7	22	86	7	75	39	3	0	56	1.16
907521--907586	17	3.8	17	72	11	53	40	3	3	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907662--907697	2	18.5	2	88	5	56	47	0	0	52	1.00
909630--909674	2	22.5	2	100	0	90	51	0	0	48	1.00
909918--909995	27	2.8	28	73	15	81	46	0	0	53	1.00
909983--910027	22	2.0	22	83	12	56	31	6	2	60	1.35
911938--912103	90	1.9	89	84	6	228	25	18	21	34	1.95
919655--919759	54	1.9	54	82	3	131	23	20	16	39	1.92
921461--921496	3	12.0	3	100	0	72	33	0	0	66	0.92
923092--923134	21	2.0	21	86	8	61	32	0	0	67	0.91
924093--924127	2	17.5	2	93	0	61	45	0	2	51	1.16
924799--924844	20	2.2	22	84	7	60	39	13	2	45	1.55
927617--927646	2	15.0	2	100	0	60	50	0	50	0	1.00
936570--936607	11	3.5	11	85	3	51	26	0	0	73	0.83
940071--940109	20	2.0	20	89	0	60	41	0	7	51	1.31
940222--940273	21	2.5	22	74	22	58	65	0	3	30	1.10
940520--940571	9	5.4	9	77	9	50	36	0	1	61	1.07
940517--940568	19	2.7	20	82	11	63	38	0	1	59	1.08
940874--940900	3	9.0	3	100	0	54	66	0	0	33	0.92
941538--941591	13	4.2	13	79	9	58	50	1	1	46	1.23
953824--953855	2	16.0	2	100	0	64	50	0	0	50	1.00
953855--953884	2	15.0	2	100	0	60	0	0	50	50	1.00
955370--955412	2	21.5	2	95	0	77	51	2	0	46	1.13
958016--958061	2	23.0	2	100	0	92	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959069--959155	40	2.2	40	95	0	156	32	16	21	29	1.95
959795--959834	20	2.0	20	85	5	53	40	2	2	55	1.27
962183--962222	2	20.0	2	100	0	80	50	0	0	50	1.00
962222--962247	2	13.0	2	100	0	52	50	0	50	0	1.00
973094--973138	2	22.5	2	100	0	90	51	0	48	0	1.00
977998--978024	2	13.5	2	100	0	54	51	0	48	0	1.00
978101--978137	15	2.4	16	86	4	58	5	5	0	89	0.60
978101--978133	12	2.8	12	95	0	57	3	6	0	90	0.52
984636--984684	25	2.0	25	84	8	64	38	0	0	61	0.96
985907--985943	15	2.4	16	82	13	51	48	2	5	43	1.40

Tables:   1   2   3   4   5   6   7   8   9