genome.fa.s199.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold199
Parameters: 2 7 7 80 10 50 1000
Length:  611138

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 574 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264980--265052	20	3.5	20	70	29	62	42	2	0	54	1.14
265947--265984	20	1.9	20	84	10	51	47	0	2	50	1.15
266219--266259	13	2.9	15	75	14	50	46	0	0	53	1.00
266963--267020	30	1.9	30	86	6	82	53	0	0	46	1.00
268215--268290	39	2.0	38	87	5	109	30	11	25	32	1.91
270468--270517	2	25.0	2	100	0	100	50	0	50	0	1.00
273600--273641	22	2.0	21	86	13	59	40	0	0	59	0.97
273632--273676	18	2.5	17	85	7	54	51	0	2	46	1.13
273620--273825	113	1.8	112	95	1	367	46	3	3	46	1.39
274841--274898	20	2.8	20	78	5	62	50	1	1	46	1.22
275746--275777	11	3.1	11	86	13	50	56	0	0	43	0.99
276529--276592	32	2.0	32	85	11	87	53	1	0	45	1.10
277055--277130	32	2.3	33	84	10	102	43	1	0	55	1.08
277055--277108	16	3.4	17	71	21	53	46	1	0	51	1.11
277115--277162	17	2.7	18	84	12	64	35	2	0	62	1.07
277055--277140	34	2.7	32	83	5	84	43	1	0	55	1.07
277058--277165	41	2.6	41	81	11	105	39	1	0	58	1.09
278307--278340	16	2.1	17	88	5	52	70	8	2	17	1.25
278812--278858	2	23.5	2	100	0	94	51	0	48	0	1.00
281285--281404	58	2.1	58	100	0	240	50	10	19	20	1.75
285425--285449	13	1.9	13	100	0	50	20	24	24	32	1.98
290446--290708	59	4.5	59	82	3	273	16	18	33	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290446--290708	117	2.2	119	80	5	284	16	18	33	31	1.94
301761--301905	72	2.0	72	89	2	220	34	5	3	56	1.39
302460--302502	21	2.0	21	82	8	52	58	4	0	37	1.19
303155--303195	14	3.2	13	83	16	59	41	0	7	51	1.30
303205--303246	20	2.1	20	86	8	59	45	0	0	54	0.99
303279--303335	21	2.8	22	86	7	68	29	5	1	63	1.27
303288--303335	21	2.3	21	92	0	78	27	6	2	64	1.28
305150--305189	21	1.9	21	85	10	55	32	0	0	67	0.91
307333--307390	5	12.2	5	72	17	52	62	0	0	37	0.96
307333--307378	19	2.3	20	92	3	76	65	0	0	34	0.93
307339--307395	23	2.7	23	84	10	68	59	0	0	40	0.97
310558--310582	7	3.6	7	100	0	50	28	0	0	72	0.86
310658--310691	17	2.0	17	88	11	52	58	0	0	41	0.98
311126--311205	39	2.1	38	83	6	99	41	0	1	57	1.07
311912--311984	33	2.2	34	81	13	82	42	0	2	54	1.14
313178--313233	21	2.5	22	80	11	60	33	1	1	62	1.16
313250--313305	22	2.6	22	86	8	71	41	0	0	58	0.98
314393--314466	34	2.1	36	82	10	89	44	1	1	52	1.17
314629--314672	22	2.0	22	86	8	63	54	0	0	45	0.99
318440--318469	2	15.0	2	100	0	60	50	50	0	0	1.00
320755--320787	2	16.5	2	93	0	57	45	3	0	51	1.16
321677--321727	23	2.2	23	85	0	66	35	0	11	52	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322777--322802	3	8.7	3	100	0	52	0	69	0	30	0.89
324733--324803	21	3.3	22	73	16	67	42	0	1	56	1.08
324746--324981	129	1.8	129	87	4	350	41	2	1	54	1.22
324887--324944	22	2.6	22	71	7	55	37	3	0	58	1.15
324854--325055	107	1.9	103	81	11	237	42	2	0	53	1.22
325470--325503	2	17.0	2	100	0	68	50	0	0	50	1.00
332659--332712	28	1.9	28	100	0	108	46	27	7	18	1.76
332889--332918	15	1.9	16	93	6	53	60	0	6	33	1.23
334772--334810	20	2.0	20	85	10	53	58	2	2	35	1.25
335001--335076	37	2.0	38	82	10	93	67	3	1	27	1.17
336688--336724	18	2.0	19	89	5	58	32	2	0	64	1.07
337036--337070	12	2.8	12	91	4	52	48	0	0	51	1.00
337058--337108	19	2.9	18	80	11	52	41	0	0	58	0.98
337025--337113	31	3.0	29	71	14	74	43	0	1	55	1.07
337542--337602	27	2.3	27	83	13	81	39	3	13	44	1.60
337542--337615	27	2.7	26	78	19	80	45	2	10	40	1.53
338650--338765	55	2.1	55	83	1	144	26	25	18	28	1.98
346188--346762	286	2.0	286	96	1	1073	39	16	16	27	1.90
346994--347051	13	4.2	13	74	21	55	53	0	0	46	1.00
346997--347051	18	3.3	18	71	23	66	54	0	0	45	0.99
346992--347051	31	1.9	31	100	0	120	53	0	0	46	1.00
347365--347403	21	1.9	21	94	5	71	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349816--349869	21	2.6	21	77	16	67	42	3	0	53	1.18
349882--349921	19	2.1	19	86	13	55	22	7	7	62	1.47
350514--350550	11	3.5	11	88	7	58	32	2	0	64	1.07
351694--351747	25	2.1	26	83	10	67	37	1	1	59	1.19
352125--352169	23	2.0	23	82	8	56	37	4	0	57	1.19
359744--359782	18	2.1	19	86	13	55	25	2	5	66	1.25
362339--362384	18	2.4	19	82	10	58	69	0	28	2	1.00
365752--365838	32	2.7	32	81	1	84	50	8	8	33	1.61
369289--369336	15	3.1	16	81	6	62	35	0	4	60	1.16
369302--369354	23	2.3	23	87	9	74	32	0	1	66	1.03
369491--369526	16	2.3	16	90	4	56	58	0	0	41	0.98
369578--369607	16	1.9	16	93	6	53	0	6	0	93	0.35
371019--371101	27	2.9	27	81	15	80	38	2	0	59	1.11
371037--371117	14	5.6	14	80	16	87	38	0	0	61	0.96
371032--371118	41	2.0	45	84	8	119	37	1	0	60	1.04
371037--371117	27	2.9	27	83	14	85	38	0	0	61	0.96
371482--371545	29	2.1	31	86	11	89	62	1	0	35	1.05
371491--371543	24	2.4	22	79	17	56	64	0	0	35	0.94
371482--371566	31	2.8	30	81	10	86	60	1	0	38	1.05
371989--372041	16	3.1	17	81	10	63	33	1	0	64	1.05
371996--372062	33	2.0	34	83	13	86	35	1	0	62	1.04
372359--372399	19	2.2	19	100	0	82	26	0	24	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373051--373094	22	2.0	22	100	0	88	40	27	18	13	1.88
374877--374903	2	13.5	2	100	0	54	48	0	0	51	1.00
375970--376013	22	2.0	22	82	4	54	47	4	0	47	1.22
375978--376022	24	2.0	23	83	16	58	48	2	0	48	1.13
377222--377255	18	1.9	18	94	5	61	14	8	0	76	1.01
377396--377421	2	13.0	2	100	0	52	50	0	0	50	1.00
377805--377852	25	2.0	25	87	4	71	25	4	2	68	1.18
377799--377853	29	1.9	28	85	10	76	27	3	1	67	1.17
377805--377873	26	2.8	24	76	8	66	30	5	1	62	1.27
377986--378023	19	2.0	20	89	5	60	65	0	0	34	0.93
377986--378031	19	2.3	19	85	7	56	63	0	2	34	1.07
378853--378912	26	2.3	27	80	11	70	30	1	3	65	1.19
380306--380350	23	2.0	23	82	8	56	28	6	0	64	1.19
380313--380367	23	2.4	24	81	6	60	36	1	0	61	1.06
382038--382086	20	2.5	20	86	6	55	53	4	0	42	1.20
386697--386761	35	1.9	32	81	9	76	58	0	0	41	0.98
387715--387790	23	3.2	22	71	20	64	57	2	0	39	1.12
387805--387844	14	3.0	14	79	20	50	40	0	0	60	0.97
387771--387833	30	2.1	31	82	8	76	44	0	1	53	1.10
388238--388308	20	3.7	19	70	10	56	32	1	1	64	1.11
388262--388329	26	2.5	27	77	15	77	35	1	1	61	1.14
388251--388389	62	2.2	62	89	0	215	35	2	1	61	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388707--388738	16	1.9	17	93	6	57	40	3	0	56	1.15
399665--399740	20	4.0	19	75	11	66	52	1	2	43	1.23
399733--399806	21	3.4	21	71	14	69	58	4	4	33	1.36
399740--399810	23	3.2	23	74	8	83	57	4	4	33	1.37
399736--399823	44	2.0	45	90	2	142	56	4	4	34	1.40
399745--399823	21	3.7	21	70	12	70	56	5	5	32	1.43
400600--400633	18	1.9	18	88	5	52	64	0	0	35	0.94
400829--400855	14	1.9	14	100	0	54	81	7	3	7	0.97
403854--403890	19	1.9	19	94	0	65	18	16	37	27	1.92
407884--407953	32	2.2	33	85	10	92	64	10	1	24	1.33

Tables:   1   2   3   4   5