genome.fa.s199.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold199
Parameters: 2 7 7 80 10 50 1000
Length:  611138

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 574 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509102--509163	6	10.3	6	85	0	79	50	8	0	41	1.32
509102--509163	10	6.2	10	86	0	79	50	8	0	41	1.32
509102--509159	26	2.2	26	96	0	107	50	8	0	41	1.33
509102--509163	4	15.5	4	89	0	79	50	8	0	41	1.32
509482--509524	17	2.4	19	80	11	54	51	6	0	41	1.29
509834--509866	17	1.9	18	88	11	52	33	0	0	66	0.92
509832--509975	29	4.8	29	69	13	87	39	6	0	53	1.31
509913--510005	31	3.0	31	82	13	95	37	6	3	52	1.43
513545--513692	73	2.0	73	98	0	287	24	18	20	37	1.94
513824--513870	24	2.0	24	82	0	58	48	25	2	23	1.62
513929--513983	16	3.4	16	75	5	56	60	27	0	12	1.33
513929--513983	25	2.2	24	77	3	65	60	27	0	12	1.33
517288--517329	23	1.9	22	85	9	59	30	7	2	59	1.37
521660--521717	2	29.0	2	100	0	116	50	0	50	0	1.00
523409--523440	2	16.0	2	100	0	64	50	0	0	50	1.00
534506--534551	2	23.5	2	86	4	67	47	2	2	47	1.26
538117--538143	2	13.5	2	100	0	54	51	0	0	48	1.00
540967--541060	45	2.1	45	92	4	154	43	19	19	18	1.88
540973--541076	45	2.3	45	85	3	120	45	18	17	19	1.86
543254--543299	17	2.8	16	84	15	58	50	4	0	45	1.21
543203--543284	43	1.9	42	82	9	103	56	3	1	39	1.25
543254--543294	17	2.5	17	88	11	59	48	4	0	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543549--543586	14	2.6	14	88	12	51	0	21	2	76	0.91
544703--544752	3	16.7	3	100	0	100	68	0	0	32	0.90
546394--546434	3	13.7	3	100	0	82	65	0	0	34	0.93
546538--546576	11	3.6	11	82	6	53	35	0	0	64	0.94
546531--546576	21	2.2	21	84	0	56	39	0	0	60	0.97
546531--546576	16	2.9	16	72	15	51	39	0	0	60	0.97
546628--546696	20	3.9	19	70	28	62	43	0	1	55	1.08
546694--546770	24	3.3	23	76	16	70	35	0	1	63	1.03
546687--546771	17	5.0	18	73	15	83	35	0	1	63	1.02
546653--546773	65	1.9	64	83	8	156	36	0	1	61	1.06
547339--547391	23	2.2	24	83	3	72	35	1	0	62	1.06
547704--547744	11	3.7	11	87	12	66	34	0	0	65	0.93
547855--547903	15	3.4	14	83	13	55	36	0	2	61	1.08
547882--547947	16	4.3	15	73	16	55	42	1	0	56	1.08
547855--547939	16	5.6	16	73	15	56	37	1	1	60	1.12
550214--550257	23	2.0	22	86	4	61	38	0	11	50	1.39
550427--550484	22	2.7	22	74	10	57	55	0	8	36	1.31
551385--551435	19	2.8	19	72	25	56	41	0	0	58	0.98
551425--551483	20	2.9	21	80	12	68	52	0	0	47	1.00
551442--551487	20	2.4	19	92	3	74	45	0	0	54	0.99
552824--552872	11	4.5	11	75	19	50	67	0	0	32	0.91
552906--552947	11	3.9	11	90	6	68	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552907--552957	21	2.5	21	87	3	77	58	1	0	39	1.09
552904--552947	6	8.0	6	76	19	51	61	0	0	38	0.96
552896--552962	27	2.5	26	81	15	75	58	1	0	40	1.07
552952--552993	17	2.5	17	80	7	50	35	7	0	57	1.26
553117--553150	10	3.4	10	91	0	50	58	0	0	41	0.98
554395--555043	323	2.0	324	93	2	1120	32	18	18	31	1.95
557263--557310	22	2.2	22	81	7	53	58	0	2	39	1.10
557272--557312	7	5.7	7	86	13	57	53	0	2	43	1.13
557501--557542	22	2.0	21	86	13	59	59	0	2	38	1.10
557990--558048	13	4.7	13	72	14	52	37	1	0	61	1.07
557985--558048	25	2.6	25	82	5	67	39	1	0	59	1.07
558604--558702	26	3.7	26	74	14	85	41	0	1	57	1.05
558709--558759	24	2.1	24	85	7	68	49	1	0	49	1.12
559300--559379	29	3.0	29	76	21	86	53	0	0	46	1.00
559331--559390	23	2.7	22	82	17	79	55	0	0	45	0.99
559331--559390	22	2.7	23	82	17	74	55	0	0	45	0.99
559484--559531	21	2.3	21	85	7	62	31	2	0	66	1.03
559941--560035	49	1.9	50	91	2	156	42	5	20	32	1.74
561313--561359	22	2.2	21	85	7	60	29	0	2	68	1.02
564628--564672	19	2.5	19	78	7	58	51	0	0	48	1.00
564775--564862	44	2.0	44	93	0	149	14	25	31	28	1.95
565050--565104	7	7.9	7	80	8	67	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565045--565113	14	4.8	14	80	10	77	62	0	0	37	0.96
565050--565113	21	3.0	21	75	11	67	60	0	0	39	0.97
565349--565400	27	2.0	27	88	7	81	42	0	3	53	1.19
565403--565436	17	1.9	18	88	5	52	58	0	0	41	0.98
565978--566143	47	4.2	39	67	27	109	50	0	0	49	1.05
566009--566054	16	2.9	16	81	12	58	54	0	0	45	0.99
566009--566058	14	3.3	14	77	20	55	54	0	0	46	1.00
565978--566065	22	4.7	20	67	23	66	50	0	0	50	1.00
566074--566158	35	2.7	30	76	16	82	52	1	0	45	1.08
565980--566127	20	7.3	20	67	22	80	49	0	0	50	1.05
565977--566147	58	2.8	58	70	11	148	50	0	0	49	1.05
566102--566159	17	3.5	17	70	25	52	50	0	0	50	1.00
568023--568068	23	2.0	24	95	4	85	30	2	23	43	1.66
575549--575581	3	11.0	3	100	0	66	33	0	0	66	0.92
575805--575846	14	2.9	15	78	7	50	33	2	0	64	1.07
575798--575852	15	3.8	14	76	7	56	29	1	0	69	0.99
575820--575914	18	5.3	20	69	26	54	37	1	3	57	1.21
584523--584565	3	14.3	3	80	0	50	37	4	32	25	1.77
585851--585987	32	4.4	31	78	12	122	43	3	2	49	1.35
585851--585971	32	3.9	32	80	9	128	43	3	3	49	1.35
586504--586540	3	12.3	3	100	0	74	32	0	0	67	0.91
592222--592255	17	1.9	18	88	5	52	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593254--593286	16	2.1	16	94	0	57	0	9	0	90	0.44
597992--598016	2	12.5	2	100	0	50	0	0	48	52	1.00
604828--604972	42	3.4	43	73	7	102	25	14	32	27	1.95
609297--609394	34	2.9	33	80	8	101	55	3	1	40	1.22
609571--609628	23	2.5	24	80	8	66	68	0	0	31	0.89
610036--610119	29	2.9	29	75	18	86	50	1	1	47	1.16

Tables:   1   2   3   4   5

The End!