genome.fa.s213.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold213
Parameters: 2 7 7 80 10 50 1000
Length:  483536

Tables:   1   2   3   4   

This is table  3  of  4  ( 377 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311689--311751	19	3.7	18	76	24	73	33	12	15	38	1.86
311689--311759	32	2.2	32	92	0	124	32	12	16	38	1.87
316293--316318	13	2.0	13	100	0	52	30	15	15	38	1.88
316273--316336	33	2.0	32	90	3	101	26	14	20	39	1.90
316547--316592	22	2.0	24	87	8	69	45	4	2	47	1.34
318964--319008	20	2.3	20	96	3	83	31	8	26	33	1.87
321428--321518	13	5.9	13	69	30	56	36	15	19	28	1.92
321441--321538	20	5.6	20	69	30	98	35	15	21	27	1.93
321428--321538	33	3.4	33	100	0	222	36	15	20	27	1.93
326054--326084	3	10.3	3	92	0	53	29	35	0	35	1.58
327689--327714	13	2.0	13	100	0	52	30	15	15	38	1.88
327814--327838	13	1.9	13	100	0	50	44	16	8	32	1.76
327848--327886	20	2.0	19	95	5	69	30	10	23	35	1.88
334284--334309	13	2.0	13	100	0	52	38	15	15	30	1.88
334266--334329	32	2.0	33	87	3	94	40	17	14	28	1.88
336532--336576	21	2.1	21	84	8	56	51	4	22	22	1.66
338378--338408	15	2.1	15	93	0	53	48	16	22	12	1.80
340480--340516	13	2.8	13	91	0	56	37	18	16	27	1.92
342133--342172	22	1.9	19	85	14	53	10	12	20	57	1.63
343053--343078	13	2.0	13	100	0	52	38	15	15	30	1.88
343035--343098	32	2.0	33	87	3	94	40	17	14	28	1.88
347335--347362	9	3.1	9	100	0	56	21	10	21	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348162--348285	52	2.4	51	90	4	187	29	17	18	34	1.94
348162--348305	52	2.8	50	81	13	159	30	17	18	33	1.94
348294--348318	13	1.9	13	100	0	50	36	16	16	32	1.90
348359--348425	33	2.0	33	88	0	98	40	13	11	34	1.81
348381--348405	13	1.9	13	100	0	50	32	16	16	36	1.90
354676--354792	59	2.0	59	84	3	155	31	16	12	39	1.86
356971--357017	24	2.0	22	84	8	58	4	19	0	76	0.95
357671--357715	19	2.4	18	82	7	54	22	13	13	51	1.75
363174--363247	17	4.4	17	63	3	51	52	1	0	45	1.09
363179--363968	53	15.2	52	77	10	663	53	5	2	38	1.39
363179--363968	104	7.6	102	76	12	637	53	5	2	38	1.39
363326--363426	44	2.3	45	85	10	136	51	3	3	40	1.39
363227--363965	160	4.8	151	72	17	428	53	5	2	38	1.40
364533--364575	22	2.0	22	90	9	70	34	6	6	51	1.56
364688--364741	22	2.4	23	77	22	62	38	9	7	44	1.65
364889--364940	22	2.4	22	76	0	59	36	5	5	51	1.50
365027--365081	22	2.5	22	94	2	94	18	18	16	47	1.83
366971--367025	21	2.6	21	82	0	74	38	23	3	34	1.73
371210--371268	27	2.2	27	87	6	84	38	0	0	61	0.96
371209--371310	31	3.4	29	75	15	93	42	0	0	57	0.98
371220--371342	28	4.4	27	73	16	101	45	0	0	54	0.99
371279--371349	33	2.2	31	85	7	88	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371321--371353	14	2.4	14	90	10	50	42	0	0	57	0.98
371404--371433	14	2.1	14	100	0	60	30	33	6	30	1.83
371671--371702	10	3.2	10	90	0	55	31	0	0	68	0.90
372286--372323	6	6.2	6	82	17	51	31	2	0	65	1.06
372355--372394	16	2.5	16	83	0	53	75	0	0	25	0.81
373148--373218	15	4.9	14	70	14	54	64	0	0	35	0.94
373422--373476	29	1.9	29	88	3	85	36	0	7	56	1.27
373488--373707	74	3.0	69	74	12	199	33	2	9	54	1.45
374697--374746	25	2.0	25	100	0	100	32	20	8	40	1.81
376745--376857	40	2.8	40	70	8	102	57	9	4	28	1.50
380783--380981	91	2.2	91	81	6	233	34	18	6	41	1.75
383418--383843	155	2.7	157	85	4	581	48	12	5	33	1.64
383982--384055	29	2.5	30	79	14	75	4	20	1	74	1.06
384603--384646	15	2.8	16	80	13	56	38	0	0	61	0.96
384609--384639	14	2.2	14	94	0	53	35	0	0	64	0.94
384683--384724	22	1.9	22	95	0	75	40	0	0	59	0.97
384656--384727	22	3.1	23	76	6	74	36	1	1	61	1.14
389538--389579	22	1.9	22	85	9	59	38	0	0	61	0.96
389573--389607	11	3.0	12	87	8	54	42	0	0	57	0.99
396313--396485	65	2.6	65	83	2	213	38	23	12	24	1.90
400116--400177	29	2.1	29	84	0	79	50	19	17	12	1.78
401045--401071	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402056--402102	17	2.8	17	75	12	51	36	2	0	61	1.08
403459--403510	2	26.0	2	92	0	86	50	0	3	46	1.20
404998--405039	11	3.8	11	82	17	52	69	0	4	26	1.08
404998--405039	22	2.0	21	86	13	59	69	0	4	26	1.08
405009--405108	52	1.9	52	82	8	123	58	2	5	35	1.31
405099--405152	17	3.3	18	74	25	57	57	5	0	37	1.22
405202--405239	12	3.2	12	78	14	51	39	0	0	60	0.97
405259--405301	18	2.3	19	88	4	61	48	0	2	48	1.14
408848--408904	17	3.5	16	77	13	55	47	5	0	47	1.24
413243--413314	20	3.6	20	78	0	81	40	11	13	34	1.81
413859--413899	16	2.4	17	84	12	57	68	2	2	26	1.15
413872--413907	16	2.3	16	95	4	65	69	0	0	30	0.89
414671--414724	21	2.5	22	81	3	65	51	3	1	42	1.30
414716--414775	22	2.6	22	75	15	59	66	3	0	30	1.07
414836--414874	20	1.9	21	89	5	62	48	2	2	46	1.29
415008--415052	20	2.4	19	82	10	58	60	0	0	40	0.97
415020--415076	25	2.3	24	81	3	69	59	1	0	38	1.08
415588--415638	16	3.4	15	73	15	52	52	0	0	47	1.00
415594--415653	29	2.1	29	87	6	86	51	0	0	48	1.00
415618--415664	24	2.0	23	83	4	58	48	4	0	46	1.21
416789--416888	18	5.4	18	69	21	57	38	5	8	49	1.54
416825--416888	18	3.5	18	72	18	60	37	4	7	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416782--416886	37	2.9	36	92	2	174	40	4	7	47	1.53
416785--416925	37	3.7	37	87	5	167	41	4	5	48	1.46
416860--416925	19	3.3	19	76	12	69	40	3	3	53	1.32
417558--417582	11	2.3	11	100	0	50	56	0	8	36	1.29
417946--417999	28	1.9	28	84	0	72	44	1	3	50	1.30
418258--418303	22	2.0	23	84	12	60	45	4	0	50	1.21
418551--418592	21	1.9	23	90	9	70	59	0	4	35	1.19
419246--419279	13	2.6	13	100	0	68	41	11	0	47	1.40
419620--419653	13	2.5	13	95	4	59	61	0	0	38	0.96
419832--419857	13	2.0	13	100	0	52	61	0	0	38	0.96
420148--420190	16	2.5	17	85	11	61	67	0	2	30	1.03
422878--422968	48	2.0	46	82	6	112	21	14	37	26	1.92
423102--423162	31	2.0	31	90	0	95	18	11	42	27	1.84
423407--423449	22	2.0	22	86	9	61	11	20	46	20	1.82
423883--424134	14	19.2	14	67	18	100	44	8	20	26	1.80
423803--424137	89	3.7	88	82	10	376	44	8	20	26	1.81
423840--424137	89	3.3	92	90	6	466	44	8	20	26	1.80
423860--424099	31	8.0	29	66	20	86	42	8	21	27	1.82
423985--424134	39	3.5	39	71	21	122	45	7	20	26	1.77
424203--424264	6	10.8	6	81	6	58	19	0	1	79	0.82
424205--424256	9	5.9	9	88	6	72	19	0	0	80	0.71
424820--424873	21	2.5	22	81	3	65	50	5	1	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425074--425099	13	2.0	13	100	0	52	46	0	0	53	1.00
425148--425188	19	2.2	20	87	12	61	65	0	0	34	0.93
432835--432869	2	17.5	2	93	0	61	54	0	0	45	0.99
434462--434505	21	2.0	22	82	4	54	36	2	4	56	1.32
434683--434728	20	2.3	20	85	10	60	50	2	2	45	1.26
434708--434790	39	2.1	41	86	4	116	44	0	2	53	1.13
434760--434822	18	3.6	18	70	27	55	44	0	0	55	0.99
435388--435426	2	19.5	2	100	0	78	51	0	0	48	1.00
436561--436600	20	2.0	20	85	9	55	50	0	0	50	1.00
438112--438170	30	2.0	30	83	6	75	44	0	0	55	0.99

Tables:   1   2   3   4