genome.fa.s222.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold222
Parameters: 2 7 7 80 10 50 1000
Length:  358842

Tables:   1   2   3   

This is table  3  of  3  ( 313 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316308--316359	13	3.5	13	73	26	50	36	17	13	32	1.89
316665--316704	3	13.3	3	100	0	80	32	0	0	67	0.91
316773--316820	21	2.5	20	76	10	55	50	0	0	50	1.00
317207--317237	6	5.2	6	96	0	53	61	0	0	38	0.96
318409--318455	12	3.9	12	85	0	58	44	0	4	51	1.21
318467--318530	10	6.4	10	75	13	51	54	0	1	43	1.09
318550--318732	12	15.5	12	64	21	66	60	1	2	34	1.21
318539--318599	23	2.7	22	85	7	86	72	0	0	27	0.85
318551--318600	13	4.2	13	82	17	72	70	0	0	30	0.88
318624--318771	18	8.4	18	67	14	62	54	0	2	42	1.16
318582--318770	86	2.3	84	90	7	296	57	1	2	38	1.22
319820--319874	13	4.4	13	78	17	55	61	0	0	38	0.96
319839--319875	11	3.2	11	88	11	56	59	0	0	40	0.97
320447--320713	119	2.3	118	83	10	304	52	2	2	42	1.26
321011--321488	126	3.7	129	87	6	638	41	1	1	55	1.19
321258--321298	18	2.2	19	83	12	50	36	2	0	60	1.10
321439--321495	25	2.4	24	77	11	64	43	0	0	56	0.99
320998--321503	257	2.0	255	84	7	680	42	1	1	53	1.19
321048--321541	126	4.0	122	84	10	397	42	1	1	55	1.16
321641--321681	14	2.9	15	79	20	52	53	0	0	46	1.00
321642--321691	14	3.5	14	81	15	50	58	0	0	42	0.98
322120--322163	23	1.9	23	81	9	54	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322894--322938	19	2.2	19	84	11	54	66	2	0	31	1.04
328608--328667	29	2.0	29	83	6	75	43	0	6	50	1.28
328627--328699	29	2.6	28	85	10	87	38	0	4	57	1.18
328647--328698	14	3.6	14	75	14	61	34	0	3	61	1.14
328865--328924	19	3.0	19	78	9	57	40	1	0	58	1.08
328876--328925	21	2.5	20	80	9	57	38	0	0	62	0.96
328939--328992	15	3.7	14	80	9	72	64	0	0	35	0.94
328938--328994	30	1.9	30	92	7	98	61	0	0	38	0.96
331503--331531	2	14.5	2	100	0	58	51	0	0	48	1.00
333346--333485	69	2.0	69	100	0	280	48	12	21	17	1.80
333654--333731	24	3.3	22	77	13	75	41	0	2	56	1.13
333924--333960	19	1.9	19	88	0	56	56	2	0	40	1.13
333903--333952	24	2.0	25	84	11	66	60	0	0	40	0.97
334151--334215	24	2.8	24	80	13	66	46	0	0	53	1.00
334171--334204	14	2.5	14	90	4	52	41	0	0	58	0.98
334151--334218	30	2.3	30	82	7	86	45	0	0	54	0.99
334186--334227	22	1.9	22	85	9	59	42	0	2	54	1.13
337505--337553	21	2.3	20	80	10	62	51	0	0	48	1.00
338732--338767	2	18.0	2	100	0	72	50	0	50	0	1.00
338844--338933	24	3.8	23	77	16	78	40	1	1	57	1.13
338875--338933	12	4.8	13	74	19	63	40	1	0	57	1.09
338861--338931	12	6.1	11	77	11	61	40	1	1	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338863--338941	13	6.6	12	74	18	58	43	1	1	54	1.16
338916--338954	15	2.7	15	85	14	55	51	0	0	48	1.00
338863--338941	24	3.3	23	79	12	79	43	1	1	54	1.16
339037--339100	21	3.1	21	82	14	64	39	0	0	60	0.97
339068--339116	20	2.4	21	89	3	73	46	0	2	51	1.12
339188--339247	31	2.0	29	84	12	77	38	1	0	60	1.07
339188--339247	10	6.0	10	74	12	52	38	1	0	60	1.07
339649--339688	21	2.0	21	86	13	59	40	0	7	52	1.30
341501--341550	8	6.0	8	79	9	55	22	0	0	78	0.76
341483--341549	17	4.3	15	77	15	64	22	1	0	76	0.87
341501--341551	17	3.0	17	82	8	68	21	0	0	78	0.75
341502--341550	18	2.8	18	88	11	68	20	0	0	79	0.73
341570--341601	16	2.0	16	93	0	55	46	3	12	37	1.57
343308--343380	32	2.3	32	83	4	94	43	6	0	49	1.29
344294--344357	29	2.2	29	78	15	71	29	25	1	43	1.64
344564--344602	14	2.7	14	88	4	51	33	2	20	43	1.65
349491--349531	15	2.7	15	80	0	55	24	48	9	17	1.76
349635--349687	27	2.0	27	85	7	72	30	41	1	26	1.66
349959--350110	75	2.0	75	85	2	207	30	7	21	39	1.82
350570--350618	11	4.5	11	82	10	57	36	0	2	61	1.08
350584--350618	16	2.1	18	89	10	56	37	0	2	60	1.12
350700--350745	22	2.0	23	84	16	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351153--351235	37	2.3	37	89	2	123	57	0	0	42	0.98
351441--351477	2	18.5	2	100	0	74	48	0	0	51	1.00
352324--352361	2	19.0	2	100	0	76	50	0	0	50	1.00
353427--353572	34	4.3	34	78	7	136	26	5	24	43	1.76
353427--353572	68	2.2	67	81	7	179	26	5	24	43	1.76
353881--353917	19	1.9	19	94	0	65	35	18	10	35	1.86
356712--356882	51	3.3	51	80	4	207	33	11	25	29	1.91

Tables:   1   2   3

The End!