Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold223
Parameters: 2 7 7 80 10 50 1000
Length:  4172444

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  26  of  26  ( 3021 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4129798--4129847
22
2.3
22
78
0
55
54
2
0
44
1.11
4130033--4130062
15
1.9
16
93
6
53
50
0
10
40
1.36
4130760--4130863
37
2.8
37
82
10
122
39
19
13
27
1.89
4131014--4131063
16
3.2
16
83
13
52
48
16
6
30
1.70
4134295--4134337
22
2.0
22
90
0
68
55
18
2
23
1.54
4135467--4135569
32
3.2
32
75
16
97
58
0
0
40
1.05
4135479--4135537
17
3.5
17
86
2
75
54
0
0
45
0.99
4135467--4135522
15
3.6
15
79
9
58
55
0
0
44
0.99
4135462--4135569
16
6.9
15
69
26
57
58
0
0
40
1.04
4135463--4135560
17
6.1
15
75
18
58
57
1
0
41
1.05
4144257--4144287
2
15.5
2
100
0
62
48
0
0
51
1.00
4144988--4145015
2
14.0
2
100
0
56
50
0
0
50
1.00
4149414--4149452
6
6.7
6
88
5
62
79
0
20
0
0.73
4149414--4149457
17
2.6
17
85
3
63
79
0
20
0
0.73
4156051--4156101
25
2.0
25
85
7
68
19
1
5
72
1.15
4161828--4161893
15
4.2
16
73
17
59
50
0
1
48
1.10
4163326--4163382
30
1.9
30
89
3
89
29
5
1
63
1.27
4163409--4163480
30
2.4
30
88
2
101
47
2
6
43
1.45
4164280--4164457
89
2.0
89
96
0
329
29
19
10
40
1.85
4166994--4167027
11
2.9
12
86
8
52
85
0
14
0
0.60
4168788--4168855
17
3.9
19
75
12
67
60
0
0
39
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26

The End!