genome.fa.s234.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold234
Parameters: 2 7 7 80 10 50 1000
Length:  616507

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 499 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291149--291173	13	1.9	13	100	0	50	32	16	16	36	1.90
291128--291192	33	2.0	33	90	0	103	26	13	18	41	1.88
291250--291287	20	1.9	20	94	0	67	34	10	21	34	1.87
292860--293226	65	5.6	64	77	8	247	20	24	12	41	1.87
292860--293254	67	6.1	66	78	9	318	21	24	12	42	1.87
292860--293226	131	2.8	131	79	4	398	20	24	12	41	1.87
293309--293333	5	5.0	5	100	0	50	0	0	20	80	0.72
293857--294006	19	8.7	19	71	25	129	39	11	18	31	1.86
293898--293987	13	6.0	13	73	26	72	37	13	17	31	1.89
293877--294006	32	4.1	32	98	0	251	39	11	18	30	1.86
294993--295033	21	1.9	22	85	5	57	21	19	17	41	1.90
298233--298361	60	2.1	63	88	5	192	30	8	6	55	1.55
300335--300359	2	12.5	2	100	0	50	52	0	0	48	1.00
301050--301091	2	21.0	2	95	0	75	52	0	0	47	1.00
301369--301443	24	3.2	23	67	17	64	37	21	6	34	1.80
301365--301458	47	2.0	47	97	0	179	38	20	7	34	1.80
301450--301501	2	26.0	2	100	0	104	50	0	0	50	1.00
303756--303789	13	2.6	13	86	13	52	52	0	0	47	1.00
307461--307487	2	13.5	2	100	0	54	51	0	0	48	1.00
307491--307528	2	19.0	2	100	0	76	50	0	50	0	1.00
311029--311153	52	2.4	52	94	0	214	28	17	17	36	1.93
311036--311173	52	2.7	52	88	4	190	32	17	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311159--311186	13	2.2	13	100	0	56	39	17	14	28	1.89
315997--316042	22	2.2	20	88	7	65	71	0	26	2	0.97
316025--316099	28	2.6	29	77	10	82	66	1	13	18	1.31
317405--317429	13	1.9	13	100	0	50	36	16	16	32	1.90
317386--317456	32	2.2	32	89	0	106	32	11	18	38	1.86
317501--317525	13	1.9	13	100	0	50	32	16	16	36	1.90
317534--317662	52	2.5	52	94	0	231	34	17	19	28	1.95
318485--318537	21	2.5	21	100	0	106	18	18	16	45	1.86
329123--329147	13	1.9	13	100	0	50	36	16	16	32	1.90
329211--329235	13	1.9	13	100	0	50	32	16	16	36	1.90
329244--329372	52	2.5	52	94	0	222	34	17	17	29	1.94
335003--335117	18	6.1	18	76	18	92	82	12	2	2	0.87
335003--335106	40	2.5	40	86	6	129	83	11	2	1	0.83
335003--335097	32	2.9	32	80	14	97	84	10	3	2	0.83
335009--335103	29	3.4	28	78	19	101	84	10	3	2	0.83
335005--335118	22	5.4	21	79	11	117	83	11	2	2	0.85
335039--335112	6	12.3	6	84	11	66	85	13	1	0	0.67
335005--335103	1	99.0	1	72	0	63	84	10	3	2	0.80
336549--336903	28	12.4	28	83	6	372	32	30	17	19	1.95
336549--336903	58	6.2	56	85	6	401	32	30	17	19	1.95
336541--336877	86	3.9	86	90	0	503	31	31	16	20	1.95
336926--337199	49	5.7	49	78	6	301	25	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336926--337208	98	2.9	98	87	3	389	25	25	18	30	1.98
337967--338118	52	2.9	52	91	1	241	36	18	16	28	1.93
341677--341719	23	1.9	23	85	4	61	41	4	2	51	1.35
342275--342308	2	17.0	2	87	0	50	44	0	5	50	1.26
342276--342308	14	2.4	14	100	0	66	42	0	6	51	1.26
344023--344073	22	2.3	23	86	10	70	39	0	0	60	0.97
347922--347990	15	4.8	13	75	19	50	24	0	4	71	1.05
348346--348372	3	9.0	3	100	0	54	66	0	0	33	0.92
349022--349086	30	2.2	31	83	8	82	41	15	0	43	1.47
350728--350777	19	2.8	18	79	8	50	64	2	12	22	1.37
352321--352372	20	2.6	20	84	0	68	30	19	11	38	1.87
361050--361104	20	2.8	20	97	0	101	45	10	12	30	1.77
363872--363924	20	2.7	20	87	0	70	32	18	13	35	1.90
363951--364008	20	2.9	20	100	0	116	31	18	10	39	1.85
364014--364038	13	1.9	13	100	0	50	32	16	16	36	1.90
365281--365305	13	1.9	13	100	0	50	36	16	16	32	1.90
365290--365346	19	3.0	20	84	7	82	33	15	17	33	1.92
371650--371699	21	2.4	22	83	9	61	32	20	0	48	1.50
371973--372017	20	2.1	22	84	8	58	17	33	28	20	1.95
373487--373554	19	3.9	19	78	21	85	35	11	14	38	1.83
373508--373532	13	1.9	13	100	0	50	36	16	16	32	1.90
373489--373551	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373594--373619	13	2.0	13	100	0	52	30	15	15	38	1.88
373574--373640	33	2.0	33	88	0	98	25	14	16	43	1.86
375981--376082	52	1.9	53	86	2	143	28	23	11	36	1.90
376091--376162	28	2.6	28	86	0	90	22	33	19	25	1.97
376116--376319	78	2.6	79	81	3	232	24	29	17	28	1.97
378096--378152	19	3.0	20	84	7	82	33	15	17	33	1.92
379107--379459	180	2.0	180	90	1	555	39	19	7	33	1.80
379443--379524	26	3.2	26	65	16	62	51	12	6	30	1.63
379425--379527	51	2.0	51	90	0	161	51	12	5	30	1.63
379440--379517	25	3.1	24	67	17	59	48	12	6	32	1.67
382462--382509	21	2.3	21	85	7	62	37	4	25	33	1.75
385739--385786	21	2.3	21	85	7	62	35	4	27	33	1.76
385756--385800	22	2.1	21	83	4	54	37	6	20	35	1.79
386992--387025	11	3.0	11	91	4	50	76	0	17	5	0.98
387295--387342	24	2.0	24	84	8	62	41	2	0	56	1.11
391836--391876	21	2.0	20	90	4	64	51	17	12	19	1.76
393392--393946	52	10.5	52	71	11	258	35	13	26	24	1.93
393341--393720	165	2.3	164	88	1	537	36	13	26	23	1.92
393603--393946	104	3.3	104	84	4	437	35	13	25	26	1.93
393667--394028	156	2.3	156	78	9	357	34	13	24	27	1.93
394113--394175	32	2.0	32	87	0	90	23	20	26	28	1.99
394121--394214	32	2.9	32	84	3	109	24	19	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394386--394450	28	2.4	27	86	2	94	29	21	24	24	1.99
394524--394558	14	2.5	14	90	0	52	42	14	8	34	1.76
408861--408902	21	2.0	21	90	4	68	52	16	11	19	1.74
408859--408905	21	2.4	19	86	10	67	48	17	12	21	1.79
409353--409388	12	3.0	12	87	0	54	33	5	33	27	1.80
410488--410630	52	2.7	51	80	10	130	36	15	25	22	1.93
411554--411607	19	2.7	19	85	5	72	42	12	14	29	1.83
418670--418729	14	4.7	13	86	10	72	83	15	1	0	0.73
418664--418727	9	6.8	9	75	16	58	82	15	1	0	0.74
418664--418728	10	6.5	10	77	12	62	83	15	1	0	0.73
419981--420631	30	21.0	30	82	7	612	23	29	14	31	1.95
419981--420631	61	10.5	61	81	8	690	23	29	14	31	1.95
419991--420631	219	3.0	216	85	5	830	24	29	15	31	1.95
420083--420731	156	4.2	155	80	8	504	23	29	14	32	1.94
420611--420799	94	2.0	94	82	2	227	20	29	12	37	1.90
420642--420815	61	2.7	63	80	8	183	20	28	12	38	1.89
420399--420834	34	13.7	33	73	13	175	20	30	13	35	1.91
420700--420865	67	2.4	68	82	8	196	18	30	12	37	1.88
420965--421751	48	17.5	46	72	14	476	27	25	18	28	1.98
420857--421260	91	4.5	89	86	4	510	25	25	19	29	1.98
421183--421651	39	11.0	39	71	17	317	28	26	18	26	1.98
421001--421477	217	2.2	216	85	5	611	27	24	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421222--421700	87	5.4	87	88	2	670	27	25	18	27	1.98
421618--421751	52	2.7	50	82	3	153	27	25	17	29	1.98
421752--421885	49	2.7	49	81	0	151	26	23	15	33	1.95
421677--421829	78	1.9	79	81	4	182	26	24	18	30	1.98
423354--423386	12	2.8	12	100	0	66	24	15	0	60	1.35
425941--425982	21	2.0	21	100	0	84	42	9	19	28	1.82
430684--430732	3	16.3	3	91	0	80	38	0	30	30	1.58
437045--437124	42	1.9	42	97	0	151	46	2	25	26	1.65
437701--437743	23	2.0	21	86	9	59	48	9	9	32	1.67
437840--437901	33	1.9	33	86	3	90	32	11	16	40	1.83

Tables:   1   2   3   4   5