genome.fa.s2351.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2351
Parameters: 2 7 7 80 10 50 1000
Length:  521823

Tables:   1   2   3   4   

This is table  3  of  4  ( 415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343719--343754	14	2.6	14	91	8	56	58	0	0	41	0.98
342583--345250	404	6.7	404	96	2	4988	36	15	10	36	1.83
344123--344158	14	2.6	14	91	8	56	58	0	0	41	0.98
342583--345250	796	3.3	798	97	1	4984	36	15	10	36	1.83
344516--344551	14	2.6	14	91	8	56	58	0	0	41	0.98
344919--344954	14	2.6	14	91	8	56	58	0	0	41	0.98
346009--346050	22	1.9	22	85	9	59	33	30	14	21	1.93
346092--346487	192	2.1	186	82	5	456	41	10	22	26	1.85
346993--347054	21	2.8	22	78	9	63	41	0	3	54	1.16
354122--354214	38	2.4	38	80	3	98	44	16	10	29	1.81
355113--355157	20	2.3	19	81	11	54	53	6	4	35	1.47
355163--355205	20	2.0	21	82	8	52	41	4	2	51	1.35
356090--356131	3	14.0	3	100	0	84	33	0	0	66	0.92
361865--361901	2	18.5	2	100	0	74	51	0	0	48	1.00
363346--363705	186	2.0	180	83	6	456	28	7	11	52	1.64
363635--363725	47	1.9	47	84	8	123	24	7	13	54	1.64
363742--363897	53	3.1	53	63	23	138	46	5	9	39	1.59
363728--363911	96	1.9	96	95	2	334	47	4	9	39	1.55
368858--368994	45	3.0	45	96	0	256	30	9	20	39	1.84
370321--370360	20	2.0	20	85	4	55	65	7	20	7	1.43
370690--370732	2	21.5	2	95	0	77	48	2	0	48	1.14
380689--380754	30	2.2	29	78	7	69	34	27	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383385--383414	13	2.3	13	100	0	60	50	0	0	50	1.00
385087--385115	9	3.0	10	90	10	51	89	0	10	0	0.48
386710--386745	10	3.6	10	85	14	56	66	11	2	19	1.35
388500--388740	97	2.5	97	89	2	369	27	29	12	29	1.93
393823--393856	13	2.5	14	90	4	52	85	0	14	0	0.60
394951--395022	30	2.4	30	95	0	126	30	13	12	43	1.82
394951--395032	30	2.7	30	88	3	94	29	17	13	40	1.87
395003--395084	34	2.4	35	88	8	116	24	24	9	41	1.85
395003--395106	33	3.1	33	84	2	127	23	25	10	41	1.86
395074--395567	27	18.0	27	80	8	417	24	30	15	29	1.95
395041--395555	55	9.3	56	82	5	550	25	30	14	30	1.95
395076--395555	137	3.5	135	85	3	595	25	30	14	29	1.95
395074--395576	165	3.1	164	84	3	627	25	30	15	29	1.95
395550--396003	28	16.2	28	83	2	489	30	27	17	24	1.97
395533--395978	84	5.3	84	86	1	538	30	26	17	25	1.97
395971--396132	31	5.3	31	70	14	111	29	26	17	26	1.97
396582--396617	18	2.0	19	89	10	58	80	5	0	13	0.88
398873--399203	97	3.4	97	88	2	479	28	27	12	31	1.93
401406--401456	23	2.2	23	100	0	102	39	5	21	33	1.78
406650--406778	52	2.5	52	97	0	249	27	18	18	34	1.95
406864--406960	19	5.7	19	71	26	92	40	16	11	31	1.84
406851--406958	32	3.4	32	92	0	180	37	16	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406914--406940	13	2.1	13	100	0	54	40	14	14	29	1.86
408406--408454	18	2.7	18	87	0	71	0	18	0	81	0.69
408412--408454	14	3.1	14	86	0	59	0	18	0	81	0.69
411399--411442	16	2.8	16	82	0	61	29	11	18	40	1.85
414969--415554	155	3.8	154	76	9	532	40	22	14	22	1.90
414947--415555	310	2.0	309	83	5	766	40	22	14	22	1.90
414903--415589	155	4.4	155	75	9	525	40	22	14	22	1.90
417210--417311	31	3.3	31	72	20	104	2	20	10	65	1.36
417198--417351	62	2.6	59	82	11	190	4	23	11	60	1.49
417389--417519	58	2.3	57	86	6	176	8	22	19	49	1.75
418089--418244	25	6.2	25	70	26	75	16	1	8	73	1.18
418086--418281	7	28.9	7	71	20	91	15	2	9	72	1.18
418140--418246	23	4.8	23	71	22	86	15	2	7	73	1.17
418129--418288	31	5.0	31	72	19	100	15	2	10	71	1.23
418171--418281	28	3.7	30	77	12	102	15	1	8	74	1.13
418139--418255	48	2.4	48	84	10	150	15	3	7	73	1.19
418178--418253	39	1.9	40	87	12	113	15	2	7	73	1.17
418139--418287	9	17.9	9	68	17	74	15	2	8	73	1.19
418068--418246	25	6.4	27	68	20	59	16	3	8	72	1.23
418086--418287	8	26.4	8	71	15	101	15	1	9	72	1.19
418960--419194	86	2.8	85	78	8	266	42	15	27	14	1.86
418912--419215	44	7.1	43	72	10	142	41	15	28	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418867--419135	130	2.1	125	79	3	277	42	16	27	14	1.87
419491--419738	44	5.7	44	77	8	168	36	17	28	17	1.93
419984--420021	16	2.4	16	100	0	76	31	13	39	15	1.86
419899--420095	102	1.9	102	80	4	227	36	18	28	16	1.93
420000--420557	42	13.2	42	72	10	280	38	18	26	17	1.92
420000--420559	85	6.7	83	73	10	269	38	18	26	17	1.92
420059--420499	208	2.1	206	81	4	474	39	17	25	17	1.92
420272--420559	127	2.3	127	81	1	335	37	17	26	18	1.93
420539--420578	19	2.1	19	90	0	62	42	17	22	17	1.89
420587--420690	43	2.4	43	91	0	172	34	19	27	18	1.95
420748--420946	44	4.5	43	74	7	150	39	15	23	22	1.92
420785--420952	88	1.9	88	87	0	246	39	14	21	23	1.91
421005--421110	36	2.9	36	82	8	144	46	10	21	21	1.81
421354--421665	90	3.5	89	83	2	383	30	16	24	28	1.97
422114--422315	89	2.3	87	79	6	219	44	12	19	23	1.85
422114--422333	88	2.5	87	79	6	219	44	12	20	23	1.85
422444--422495	10	5.1	10	80	13	61	5	0	9	84	0.77
422444--422493	21	2.4	21	86	0	64	6	0	8	86	0.72
423880--423905	13	2.0	13	100	0	52	30	15	15	38	1.88
423944--424019	21	3.7	21	80	3	100	28	17	11	42	1.84
423965--424037	20	3.6	20	81	3	101	31	19	13	35	1.91
423944--424037	41	2.3	41	98	0	179	29	18	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424658--424716	31	1.9	31	100	0	118	44	25	3	27	1.70
424703--424728	12	2.2	12	100	0	52	46	7	7	38	1.61
424672--424759	43	2.0	43	100	0	176	45	20	4	29	1.71
426557--426595	13	3.0	13	96	0	69	35	15	17	30	1.91
428673--428703	15	2.1	15	93	0	53	12	22	16	48	1.80
432766--432791	13	2.0	13	100	0	52	30	15	15	38	1.88
432830--432905	21	3.7	21	80	3	100	28	17	11	42	1.84
432851--432923	20	3.6	20	81	3	101	31	19	13	35	1.91
432830--432923	41	2.3	41	98	0	179	29	18	12	39	1.88
433551--433605	22	2.5	22	73	5	58	5	18	1	74	1.10
437109--437694	309	1.9	309	80	4	689	40	21	14	23	1.90
437041--437728	155	4.4	154	75	8	515	40	21	14	23	1.90
439355--439492	58	2.4	58	81	8	156	3	23	12	60	1.47
439769--439899	58	2.2	59	90	1	201	9	26	12	50	1.72
440378--440457	7	10.7	7	72	16	54	13	2	10	73	1.18
440368--440459	31	2.9	30	75	4	85	14	2	9	73	1.17
440368--440459	15	5.9	16	74	7	73	14	2	9	73	1.17
448635--448746	35	3.2	34	83	7	136	40	2	0	56	1.20
448721--448745	10	2.5	10	100	0	50	28	0	0	72	0.86
448884--448920	15	2.6	14	91	4	56	37	5	5	51	1.48
448885--448920	14	2.5	15	90	4	56	38	5	5	50	1.49
449929--449986	28	2.1	28	83	0	71	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451624--451650	2	13.5	2	100	0	54	51	0	0	48	1.00
452948--452991	18	2.4	19	84	7	63	59	2	0	38	1.10
455313--455410	32	3.0	32	95	1	169	35	12	16	35	1.86
455311--455408	19	5.8	18	69	28	81	34	12	16	36	1.86
455365--455389	13	1.9	13	100	0	50	36	16	16	32	1.90
459343--459502	80	2.0	80	100	0	320	32	20	10	37	1.85
466094--466228	52	2.6	50	80	7	148	35	14	23	25	1.94
466161--467063	79	11.4	79	92	1	1470	33	14	24	26	1.95
467652--467729	34	2.3	34	97	0	147	56	10	12	20	1.65
468299--468482	35	5.3	35	84	8	261	17	30	6	45	1.74

Tables:   1   2   3   4