genome.fa.s2351.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2351
Parameters: 2 7 7 80 10 50 1000
Length:  521823

Tables:   1   2   3   4   

This is table  4  of  4  ( 415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468299--468495	67	2.9	66	89	5	283	17	28	6	47	1.71
469107--469238	42	3.2	41	79	10	144	38	12	29	18	1.89
469221--469394	61	2.9	60	83	7	217	28	20	25	25	1.99
469225--469625	216	1.9	210	85	6	547	27	20	26	25	1.99
469436--469803	61	6.3	59	86	8	426	23	20	28	27	1.99
469275--469720	155	2.7	161	83	9	507	26	19	27	25	1.99
469499--469808	55	5.4	54	87	7	377	23	20	29	27	1.99
469824--470233	55	7.3	55	86	5	538	24	22	26	26	2.00
469824--470240	114	3.7	109	85	5	541	25	21	26	25	2.00
469824--470636	169	5.0	168	76	15	729	26	20	27	25	1.99
470254--470447	60	3.3	58	84	8	236	24	21	27	26	1.99
470053--470641	214	2.8	214	91	4	936	26	20	27	25	1.99
470491--470636	60	2.4	61	88	3	224	28	19	26	26	1.99
470470--470635	60	2.8	58	86	6	215	26	20	25	27	1.99
476677--476812	51	2.6	50	80	6	148	35	15	23	25	1.94
476744--477049	79	3.9	79	92	0	513	32	15	25	26	1.95
476823--477258	209	2.1	209	98	0	836	32	14	25	27	1.95
476981--477100	51	2.4	51	95	0	213	30	14	26	28	1.95
476902--477179	130	2.1	130	91	0	448	33	14	24	27	1.95
477032--477618	79	7.4	79	92	0	967	32	14	26	26	1.95
478830--479013	35	5.4	35	87	7	279	18	30	6	44	1.75
478830--479026	67	2.9	67	91	5	303	17	28	6	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482452--482508	29	1.9	30	85	7	80	56	1	1	40	1.20
482504--482535	15	2.1	15	100	0	64	25	12	6	56	1.59
482499--482537	15	2.8	14	88	11	62	28	12	5	53	1.60
482660--482693	16	2.2	15	89	5	50	35	8	0	55	1.31
484684--484808	20	5.8	20	79	17	142	26	16	14	43	1.86
487151--487227	28	2.7	29	90	4	113	23	31	19	25	1.98
487185--487489	79	3.9	78	78	9	314	27	26	13	32	1.93
487105--487306	107	1.9	107	86	0	287	26	28	14	30	1.95
487185--487510	158	2.1	159	79	7	360	27	26	13	32	1.94
491075--491485	207	2.0	207	96	0	761	31	36	13	18	1.90
493887--494326	61	7.2	59	84	4	493	24	25	19	31	1.98
494340--494774	43	10.0	43	75	12	291	21	24	11	42	1.86
494340--494774	88	5.0	85	77	8	376	21	24	11	42	1.86
494341--494747	132	3.1	127	79	10	364	20	24	11	43	1.85
497044--497118	28	2.7	30	88	12	115	22	30	20	26	1.98
496996--497302	106	2.9	106	80	7	302	26	27	15	30	1.96
497153--497223	27	2.6	28	84	8	92	23	30	21	23	1.99
497180--497355	79	2.2	79	87	6	250	27	26	15	31	1.96
498605--498634	4	7.2	4	96	3	51	70	0	3	26	1.03
502174--502244	20	3.5	20	77	7	81	40	14	11	33	1.81
502167--502244	40	2.0	39	89	2	120	41	14	11	33	1.81
504664--504703	17	2.4	17	86	0	53	20	0	7	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504666--504708	22	2.0	22	86	9	61	20	0	6	72	1.08
509282--509355	36	2.1	36	94	0	130	22	24	22	29	1.99
510618--510654	2	18.5	2	100	0	74	48	0	0	51	1.00
517615--517665	24	2.2	23	80	16	61	43	1	1	52	1.23
518684--518747	34	1.9	33	84	9	85	57	0	0	42	0.98
519295--519327	15	2.1	16	94	5	59	60	0	3	36	1.12
519290--519330	15	2.4	17	76	23	50	53	0	2	43	1.13
519312--519570	130	2.0	125	87	9	373	56	1	2	39	1.21
519541--519575	16	2.2	16	95	5	63	60	0	0	40	0.97
519540--519577	15	2.4	17	86	13	62	57	0	0	42	0.98
520294--520748	92	5.0	90	82	5	490	43	6	14	34	1.72

Tables:   1   2   3   4

The End!