genome.fa.s240.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold240
Parameters: 2 7 7 80 10 50 1000
Length:  472780

Tables:   1   2   3   4   

This is table  3  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263924--263986	33	1.9	32	87	9	92	28	14	17	39	1.89
263924--263986	32	1.9	33	87	9	94	28	14	17	39	1.89
264588--264673	38	2.3	39	85	4	113	32	25	4	37	1.77
266023--266065	20	2.1	20	82	4	50	16	30	37	16	1.91
267404--267518	51	2.2	52	86	4	153	34	14	23	26	1.94
267766--268091	51	6.4	51	81	5	282	32	12	26	29	1.92
267450--267833	79	4.9	79	92	1	608	32	14	25	27	1.94
267766--268046	155	1.8	155	84	4	388	32	11	25	30	1.92
268102--268235	51	2.6	51	82	5	164	30	12	27	29	1.93
269172--269267	43	2.2	43	90	0	156	7	19	38	34	1.80
269222--269344	55	2.2	55	79	0	138	9	20	36	33	1.85
269614--269816	50	4.1	50	98	0	379	16	25	13	44	1.84
269806--269869	26	2.5	26	97	0	119	10	31	7	50	1.66
269982--270008	6	4.5	6	100	0	54	29	0	14	55	1.40
270630--271118	56	8.4	60	81	11	533	26	20	26	26	1.99
270629--271118	173	2.8	175	87	6	658	27	20	26	26	1.99
270630--271118	117	4.2	112	81	10	506	26	20	26	26	1.99
272119--272151	9	3.8	9	88	8	50	3	0	6	90	0.52
272119--272151	17	1.9	17	93	0	57	3	0	6	90	0.52
284512--284626	52	2.2	52	85	1	151	39	14	19	26	1.90
284561--284942	79	4.8	79	89	0	575	33	13	23	28	1.93
284874--285146	51	5.4	50	82	6	282	31	13	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284874--285146	102	2.7	101	82	4	325	31	13	26	27	1.94
285160--285290	51	2.6	52	79	8	162	29	11	27	31	1.92
286226--286321	43	2.2	43	88	0	147	8	21	36	33	1.84
286200--286423	18	12.0	18	64	15	80	8	23	36	31	1.86
286669--286871	50	4.1	50	97	0	379	15	25	14	44	1.84
286861--286951	26	3.5	26	98	0	173	10	30	8	49	1.68
287245--287349	13	9.0	13	68	29	76	41	12	18	27	1.86
287270--287368	20	5.7	20	67	30	82	45	10	18	26	1.80
287258--287368	33	3.4	33	97	0	204	44	10	18	27	1.82
289309--289381	20	3.6	20	81	3	101	35	13	19	31	1.91
289327--289402	21	3.7	21	80	3	100	42	11	17	28	1.84
289309--289402	41	2.3	41	98	0	179	39	12	18	29	1.88
289441--289466	13	2.0	13	100	0	52	38	15	15	30	1.88
293528--293558	15	2.1	15	93	0	53	48	16	22	12	1.80
295572--295650	20	3.7	21	75	15	72	26	13	15	44	1.84
295637--295675	13	3.0	13	96	0	69	30	17	15	35	1.91
298097--298169	20	3.6	20	81	3	101	35	13	19	31	1.91
298115--298190	21	3.7	21	80	3	100	42	11	17	28	1.84
298097--298190	41	2.3	41	98	0	179	39	12	18	29	1.88
298229--298254	13	2.0	13	100	0	52	38	15	15	30	1.88
303399--303442	20	2.1	22	91	8	74	29	9	20	40	1.83
303496--303521	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303476--303539	33	2.0	32	87	9	94	28	14	17	40	1.88
303476--303539	32	2.0	33	87	9	96	28	14	17	40	1.88
304811--304862	20	2.7	20	90	3	79	26	13	21	38	1.90
304893--304945	20	2.6	21	82	8	65	30	16	15	37	1.90
307413--307450	13	2.9	13	88	0	58	31	18	15	34	1.92
307438--307535	47	2.0	50	84	9	132	29	17	17	35	1.93
307644--307669	8	3.2	8	100	0	52	61	23	0	15	1.33
313593--313656	33	2.0	32	87	3	92	26	14	18	40	1.89
315903--315954	22	2.5	20	81	12	61	46	5	7	40	1.57
316902--317058	70	2.2	70	98	0	305	30	11	29	28	1.92
318270--318307	17	2.2	18	86	13	53	71	2	5	21	1.19
318656--318698	17	2.5	17	74	11	52	2	23	2	72	1.08
319937--320333	32	12.4	32	91	0	573	14	18	34	31	1.92
320316--320972	137	4.8	135	92	1	1026	28	14	33	22	1.94
320319--321004	164	4.2	162	88	3	1003	29	14	33	23	1.94
320316--320972	27	24.0	27	90	2	999	28	14	33	22	1.94
328644--328699	17	3.3	17	74	0	58	1	19	0	78	0.84
329926--329992	37	1.9	35	88	11	102	29	25	11	32	1.92
330463--330487	13	1.9	13	100	0	50	32	20	16	32	1.94
330545--330599	21	2.5	22	94	5	103	36	10	25	27	1.89
330587--330617	10	3.1	10	90	0	53	41	6	29	22	1.78
330642--330778	53	2.6	53	96	1	247	27	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330748--330818	20	3.5	20	77	11	74	29	12	16	40	1.86
330858--330898	21	2.0	21	85	9	57	39	9	12	39	1.76
331100--331311	114	1.9	114	86	2	309	33	16	16	33	1.92
331748--331819	36	2.0	36	89	2	110	31	9	31	26	1.89
331748--331833	36	2.5	34	85	7	104	29	11	29	30	1.92
332863--332917	20	2.8	20	91	5	85	27	14	14	43	1.84
335206--335568	79	4.6	79	80	4	358	26	25	14	33	1.95
337312--337354	21	2.0	21	86	0	59	65	0	13	20	1.27
337327--337369	21	2.0	21	86	0	59	62	0	20	16	1.32
339879--340051	44	3.9	44	80	3	186	21	26	13	38	1.91
340161--340305	42	3.5	41	80	3	130	15	32	16	35	1.90
340200--340364	42	3.9	42	81	4	165	14	33	18	33	1.91
340368--340948	43	13.5	43	74	5	368	17	26	16	39	1.91
340356--340948	86	6.9	85	79	3	465	17	26	16	39	1.91
340314--340948	129	4.9	127	76	5	492	17	26	16	39	1.91
342041--342752	165	4.3	163	83	6	760	27	11	7	52	1.65
342041--342752	166	4.3	164	84	6	769	27	11	7	52	1.65
342041--342803	331	2.3	330	81	4	788	28	12	7	52	1.65
343312--343348	14	2.7	15	84	16	53	81	5	13	0	0.86
343323--343372	11	4.6	10	79	18	55	82	2	16	0	0.77
344919--344974	6	10.0	6	79	13	50	30	1	0	67	1.01
344926--344982	5	10.8	5	79	5	51	26	3	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344919--344974	21	2.6	21	80	11	60	30	1	0	67	1.01
346161--346461	166	1.8	167	86	2	435	36	9	12	41	1.76
348874--348899	13	2.0	13	100	0	52	30	15	15	38	1.88
351441--351466	13	2.0	13	100	0	52	38	15	15	30	1.88
353545--353575	15	2.1	15	93	0	53	12	22	16	48	1.80
355377--355421	21	2.1	21	84	8	56	22	20	4	53	1.63
358956--359214	138	1.9	141	85	4	364	46	12	10	30	1.76
360877--360917	19	2.1	19	86	9	55	68	0	7	24	1.15
362111--362615	85	6.0	85	80	6	461	45	12	23	17	1.83
362072--362614	42	12.8	42	66	12	173	45	12	23	17	1.83
362794--362957	47	3.5	47	83	3	213	42	17	18	21	1.90
362780--363005	94	2.4	92	83	1	290	42	15	19	22	1.89
368022--368300	79	3.5	79	79	6	296	36	13	22	27	1.92
368050--368300	80	3.2	78	79	7	247	36	14	22	26	1.93
369033--369066	10	3.5	10	88	8	52	20	23	20	35	1.96
369033--369063	9	3.3	9	95	4	53	19	25	19	35	1.95
372143--372216	26	2.7	27	81	8	78	5	10	4	79	1.02
372148--372208	23	2.6	23	80	12	70	3	11	3	81	0.92
377153--377381	114	2.0	114	93	1	388	30	16	15	37	1.89
381168--381244	20	3.8	20	76	10	84	42	10	10	36	1.73
382321--382588	140	1.9	142	84	1	360	42	10	12	33	1.78
383390--383416	12	2.2	12	100	0	54	66	11	22	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383469--383506	13	2.8	13	81	18	51	0	23	0	76	0.79
384141--384556	165	2.5	168	77	7	422	49	8	11	31	1.68
386404--386845	79	5.6	77	79	8	449	37	10	22	29	1.88
386411--386845	159	2.8	157	83	4	552	37	10	22	29	1.88
388788--388813	13	2.0	13	100	0	52	30	15	15	38	1.88
389510--389553	21	2.1	21	83	8	54	25	31	4	38	1.76
391355--391379	13	1.9	13	100	0	50	32	16	16	36	1.90
396972--396997	13	2.0	13	100	0	52	30	15	15	38	1.88
396952--397015	32	2.0	33	87	3	94	28	14	17	40	1.88
398554--398663	52	2.1	51	86	1	148	40	12	17	30	1.87

Tables:   1   2   3   4