genome.fa.s240.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold240
Parameters: 2 7 7 80 10 50 1000
Length:  472780

Tables:   1   2   3   4   

This is table  4  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398625--398698	31	2.4	31	95	0	130	37	13	18	29	1.90
398571--398723	82	1.9	83	91	1	254	40	11	18	30	1.85
398759--398831	20	3.6	20	80	9	67	34	20	8	36	1.83
399578--399689	42	2.7	42	79	6	129	39	10	28	21	1.87
399577--399688	41	2.7	41	78	8	127	39	11	27	21	1.88
399653--400301	62	10.5	62	81	3	682	33	18	22	25	1.97
399653--400301	252	2.6	246	81	5	716	33	18	22	25	1.97
399654--400304	314	2.1	305	82	4	768	33	18	22	25	1.97
407424--407462	20	2.0	20	89	0	60	43	17	7	30	1.77
407485--407523	20	2.1	19	90	9	62	30	20	12	35	1.90
409902--409978	33	2.4	30	77	14	75	46	2	18	32	1.62
411461--411486	13	2.0	13	100	0	52	30	15	15	38	1.88
412193--412236	21	2.1	21	83	8	54	25	31	4	38	1.76
414039--414077	13	3.0	13	92	0	60	35	12	15	35	1.86
416156--416186	15	2.1	15	93	0	53	12	22	16	48	1.80
417989--418033	21	2.1	21	84	8	56	22	20	4	53	1.63
420253--420278	13	2.0	13	100	0	52	30	15	15	38	1.88
420233--420296	32	2.0	33	87	9	96	29	14	17	39	1.88
420738--421271	293	1.8	293	92	0	899	32	19	16	31	1.94
423898--423944	21	2.2	21	92	0	76	23	19	0	57	1.41
423910--423958	21	2.3	21	86	6	64	12	20	0	67	1.22
426540--426577	3	12.7	3	94	0	67	36	0	34	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428144--428218	20	3.8	20	85	0	96	33	13	12	41	1.81
432068--432141	20	3.7	20	77	0	85	33	13	12	40	1.82
440302--441186	28	32.2	27	92	2	1322	23	33	15	27	1.95
440303--441186	83	10.7	82	91	2	1355	23	33	15	27	1.95
441184--441789	28	20.5	28	83	6	399	29	28	18	23	1.98
441182--441802	56	10.5	58	81	5	465	28	28	19	23	1.98
441210--441547	32	10.9	32	83	5	365	30	29	19	20	1.97
441184--441565	64	6.2	64	82	6	395	29	29	18	21	1.97
441209--441794	84	6.6	93	81	7	444	29	28	19	23	1.98
441884--442084	45	4.3	45	75	14	158	21	26	17	33	1.96
441918--442093	47	3.7	47	83	6	223	21	26	18	34	1.96
441913--442093	94	1.9	94	91	2	294	20	26	17	34	1.95
442471--442536	20	3.3	20	78	0	78	34	12	9	43	1.73
449912--449960	19	2.6	19	86	0	80	32	10	20	36	1.86
461540--461668	52	2.5	52	96	0	231	30	17	17	34	1.93
461540--461688	52	2.9	51	89	4	219	31	17	17	33	1.93
461740--461777	20	1.9	19	94	5	67	52	10	10	26	1.68
462111--462183	22	3.4	21	80	12	69	80	10	0	8	0.89
462131--462162	12	2.7	12	100	0	64	87	6	0	6	0.67
463475--464311	28	29.5	28	82	6	943	30	29	16	22	1.96
463470--464324	142	6.0	142	85	4	1021	30	29	17	22	1.96
465193--465297	20	4.8	20	71	21	84	30	17	12	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465183--465279	50	1.9	50	91	0	158	28	18	12	40	1.87
465193--465347	71	2.2	71	91	1	249	29	17	11	41	1.85
472237--472264	14	2.0	14	100	0	56	35	21	14	28	1.92

Tables:   1   2   3   4

The End!