genome.fa.s242.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold242
Parameters: 2 7 7 80 10 50 1000
Length:  756895

Tables:   1   2   3   4   

This is table  3  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405867--405936	33	2.1	33	97	0	131	27	17	14	41	1.87
405887--405917	13	2.4	13	100	0	62	29	16	16	38	1.90
405850--405956	20	5.7	19	70	23	68	28	15	13	42	1.84
408465--408581	51	2.3	52	81	10	143	30	26	12	29	1.93
408518--408745	79	2.9	78	78	7	248	26	24	14	34	1.94
411905--411951	10	4.7	10	82	7	60	87	12	0	0	0.55
411906--411938	17	1.9	17	93	0	57	87	12	0	0	0.53
411905--411956	19	2.6	19	80	14	61	86	11	1	0	0.65
413022--413046	13	1.9	13	100	0	50	36	16	16	32	1.90
413002--413068	33	2.0	33	88	0	98	34	11	13	40	1.81
413111--413135	13	1.9	13	100	0	50	32	16	16	36	1.90
413124--413268	52	2.8	53	88	4	197	35	18	16	29	1.93
414119--414165	21	2.3	20	82	13	60	25	17	14	42	1.87
416908--416972	28	2.4	27	81	2	76	24	26	21	27	1.99
417146--417304	32	5.0	32	74	9	94	28	28	18	23	1.98
417408--418391	52	19.9	50	68	15	287	25	24	16	33	1.96
417412--417567	48	3.1	49	78	6	145	26	23	15	34	1.94
417560--417751	95	2.0	94	81	4	224	28	22	17	32	1.96
417925--418010	43	2.0	42	90	2	136	26	25	18	29	1.98
418307--418397	43	2.1	43	87	0	128	24	24	18	32	1.97
419036--419065	8	3.6	8	95	4	51	80	10	0	10	0.92
419036--419067	9	3.7	9	91	8	57	78	9	0	12	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419027--419067	17	2.5	17	92	4	66	78	7	0	14	0.96
420591--420750	77	2.1	76	82	9	189	26	27	14	31	1.95
420610--420789	77	2.3	79	79	6	188	26	25	16	31	1.96
426374--426693	79	4.1	79	77	7	325	33	14	25	26	1.94
426651--426881	108	2.1	108	89	1	347	35	16	21	25	1.94
429278--429303	13	2.0	13	100	0	52	38	15	15	30	1.88
429355--429417	19	3.6	19	72	24	75	36	17	12	33	1.88
429342--429417	32	2.4	32	93	0	125	35	17	14	32	1.90
429476--429518	21	2.0	22	90	4	70	34	13	18	32	1.90
430320--430345	13	2.0	13	100	0	52	30	15	15	38	1.88
430300--430363	32	2.0	33	84	3	85	29	12	14	43	1.81
431018--431042	12	2.1	12	100	0	50	40	8	8	44	1.63
431300--431411	61	1.9	57	87	8	163	26	22	28	22	1.99
432917--432941	13	1.9	13	100	0	50	32	16	20	32	1.94
439189--439262	20	3.7	20	82	8	78	29	17	13	39	1.88
440074--440173	42	2.4	42	80	8	116	41	11	29	19	1.85
440266--440847	55	10.3	55	85	6	708	24	19	28	27	1.99
455633--455658	13	2.0	13	100	0	52	38	15	15	30	1.88
455615--455678	32	2.0	33	90	3	103	42	15	14	28	1.86
459725--459764	15	2.7	15	92	0	62	50	15	20	15	1.79
461840--461874	13	2.7	13	95	0	61	34	20	14	31	1.92
461986--462031	21	2.2	20	81	11	58	32	19	4	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463484--463527	23	2.0	21	82	8	52	15	9	15	59	1.61
464421--464445	12	2.1	12	100	0	50	36	16	16	32	1.90
464403--464465	31	2.0	31	90	6	101	39	15	14	30	1.87
469383--469407	13	1.9	13	100	0	50	32	16	16	36	1.90
469496--469520	13	1.9	13	100	0	50	32	20	16	32	1.94
469477--469540	33	2.0	32	90	9	103	37	18	15	28	1.92
470443--470544	41	2.5	41	85	7	136	45	11	26	16	1.82
470574--470828	43	5.9	41	78	12	217	41	12	26	19	1.87
470812--471362	61	9.0	62	82	7	606	28	20	27	24	1.99
478266--478290	13	1.9	13	100	0	50	44	16	8	32	1.76
478241--478309	33	2.1	33	86	5	95	40	18	10	30	1.84
478339--478393	19	2.8	19	91	2	83	36	16	16	30	1.91
479825--479870	21	2.2	21	88	0	65	50	0	0	50	1.00
479827--479859	17	2.0	17	88	5	50	54	0	0	45	0.99
479982--480032	20	2.4	21	90	9	77	43	0	0	56	0.99
479952--480006	14	4.1	14	73	20	55	41	1	1	54	1.21
482692--482753	29	2.1	28	82	11	72	54	3	3	38	1.32
492171--492222	25	2.1	25	88	0	77	67	0	0	32	0.91
492269--492317	15	3.4	15	83	16	68	65	0	0	34	0.93
492262--492319	13	4.3	14	79	14	68	63	0	1	34	1.04
492498--492570	28	2.6	29	80	12	80	47	2	1	47	1.24
494379--494454	12	6.9	11	75	15	52	39	2	48	9	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494378--494463	24	3.8	24	72	17	85	41	2	45	10	1.51
494369--494487	42	2.8	42	90	0	184	42	2	45	9	1.49
500063--500214	78	1.9	79	83	7	195	38	5	28	28	1.78
500299--500333	9	3.8	9	96	3	61	34	0	0	65	0.93
500524--500559	14	2.5	15	90	4	56	69	0	0	30	0.89
501207--501247	21	2.0	21	85	9	57	43	0	0	56	0.99
504112--504161	18	2.7	18	84	9	66	50	6	6	38	1.52
504311--504390	33	2.4	33	83	8	101	35	13	15	36	1.86
506877--506910	17	2.0	17	88	0	50	61	20	8	8	1.52
509998--510384	158	2.5	156	85	5	530	27	25	13	34	1.93
509999--510406	79	5.2	78	79	7	380	27	25	12	34	1.93
510469--510501	12	2.8	12	100	0	66	15	9	6	69	1.34
516555--517429	62	14.0	62	82	4	923	24	24	19	32	1.98
516778--516922	73	2.0	73	91	0	236	22	23	24	30	1.99
517461--517818	42	8.6	42	74	11	228	21	24	12	41	1.87
517468--517819	84	4.3	81	75	12	299	22	24	12	41	1.88
517705--517819	40	2.8	41	80	9	126	19	26	15	39	1.91
520749--521097	79	4.4	78	79	6	364	26	24	13	34	1.93
520749--521119	156	2.4	157	80	8	448	25	25	14	33	1.94
525670--525858	95	2.0	95	82	8	233	37	11	24	26	1.90
525719--525920	95	2.1	97	83	8	247	38	10	22	28	1.87
527152--527192	21	2.0	20	85	4	55	51	14	12	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528778--528803	13	2.0	13	100	0	52	30	15	15	38	1.88
528758--528822	33	2.0	33	87	6	96	27	13	16	41	1.87
530900--530942	20	2.1	20	86	4	59	9	30	44	16	1.79
531383--531421	13	3.0	13	96	0	69	35	15	17	30	1.91
542475--542589	20	5.8	20	74	6	90	40	14	13	32	1.85
542476--542589	40	2.8	40	91	0	174	39	14	13	32	1.85
542606--542655	19	2.5	20	83	3	66	40	12	14	34	1.82
542533--542690	70	2.2	71	92	1	255	41	12	16	29	1.85
542643--542721	31	2.5	31	91	0	131	44	12	18	24	1.85
542705--542780	20	3.8	20	83	0	89	46	15	11	26	1.81
542705--542780	40	1.9	40	83	0	98	46	15	11	26	1.81
543688--543751	32	2.0	32	81	6	76	29	15	25	29	1.96
543742--544067	28	11.5	28	87	4	429	20	18	31	29	1.96
543692--544067	58	6.5	56	86	5	441	22	18	30	28	1.97
543742--544067	86	3.8	85	85	5	442	20	18	31	29	1.96
545313--545413	1	101.0	1	74	0	58	0	2	12	84	0.74
545320--545416	10	10.0	10	79	14	98	0	3	14	82	0.79
545313--545413	18	5.3	18	82	10	114	0	2	12	84	0.74
545313--545413	21	5.2	20	77	15	106	0	2	12	84	0.74
545313--545414	20	5.4	19	83	8	127	0	2	13	83	0.76
548675--548699	13	1.9	13	100	0	50	36	16	16	32	1.90
548652--548719	33	2.1	33	91	2	111	32	13	17	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548741--548791	20	2.5	21	83	3	68	27	15	15	41	1.88
549357--549400	21	2.0	21	86	4	61	31	29	2	36	1.70
550607--550631	13	1.9	13	100	0	50	32	16	16	36	1.90
554110--554134	13	1.9	13	100	0	50	36	16	16	32	1.90
554087--554154	33	2.1	33	88	2	102	30	14	19	35	1.92
554176--554228	20	2.6	21	84	3	72	28	16	15	39	1.89
554220--554249	13	2.2	14	94	5	53	43	20	13	23	1.86
566050--566124	20	3.8	20	76	0	69	37	13	16	33	1.87
566068--566277	71	3.0	71	91	1	341	41	13	15	29	1.85
566141--566196	20	2.8	20	86	0	76	41	14	8	35	1.77

Tables:   1   2   3   4