genome.fa.s242.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold242
Parameters: 2 7 7 80 10 50 1000
Length:  756895

Tables:   1   2   3   4   

This is table  4  of  4  ( 471 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566019--566196	91	2.0	91	84	4	234	40	12	15	30	1.85
566210--566265	20	2.8	20	83	0	76	44	14	10	30	1.79
566526--566609	37	2.2	38	85	2	107	21	22	23	32	1.98
567089--567169	13	6.2	13	77	9	85	35	17	16	30	1.92
567531--567600	27	2.6	28	76	13	74	24	15	21	38	1.92
568503--568581	40	1.9	43	85	12	112	16	5	3	74	1.14
572123--572538	164	2.5	164	81	3	494	31	10	9	49	1.69
573940--574199	52	5.0	51	80	5	220	36	14	23	25	1.93
574275--574734	32	14.2	32	73	13	272	19	15	32	32	1.93
574267--574709	64	6.9	65	79	6	363	19	15	32	32	1.93
574267--574562	129	2.3	128	82	3	342	19	16	32	31	1.94
574371--574724	129	2.7	127	79	8	333	19	16	32	31	1.94
574616--574746	33	4.1	32	75	13	117	22	12	29	35	1.91
574761--574878	34	3.6	33	82	3	132	38	8	29	23	1.84
583590--583659	20	3.4	19	75	14	59	40	11	15	32	1.83
583706--583759	21	2.7	20	75	8	56	37	12	11	38	1.79
587586--587638	27	2.0	27	88	0	79	28	11	32	28	1.91
589961--589995	13	2.8	13	86	4	54	37	20	11	31	1.88
590785--590822	19	2.0	19	85	10	51	42	13	2	42	1.57
591020--591055	16	2.2	16	95	0	63	61	11	13	13	1.58
592703--592778	32	2.4	32	86	6	102	35	19	9	35	1.84
595795--596035	92	2.6	94	87	4	346	12	26	14	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596682--596754	14	5.2	14	75	11	51	21	2	4	71	1.16
601431--601462	3	10.7	3	93	0	55	28	34	0	37	1.57
603215--603253	20	1.9	21	94	5	71	20	17	20	41	1.91
611093--611149	21	2.8	21	91	2	89	24	17	12	45	1.83
613488--613874	53	7.4	52	73	12	274	29	26	11	32	1.92
613594--613669	27	2.8	28	77	2	82	25	31	19	23	1.98
613488--613874	104	3.7	104	71	14	294	29	26	11	32	1.92
613488--613874	51	7.4	52	73	12	256	29	26	11	32	1.92
613857--613933	28	2.7	30	88	7	108	23	32	19	24	1.97
613485--613984	264	1.9	264	91	3	819	28	27	12	31	1.93
613808--614012	107	1.9	107	82	5	252	27	28	15	29	1.96
613885--614090	78	2.6	79	84	3	256	25	28	16	30	1.96
626482--626534	1	53.0	1	76	0	52	88	7	3	0	0.61
626481--626534	10	5.6	10	80	8	58	87	9	3	0	0.67
626482--626534	19	2.8	18	83	10	70	88	7	3	0	0.61
627501--628168	59	11.3	59	94	1	1058	25	27	20	26	1.99
628808--628833	13	2.0	13	100	0	52	30	15	15	38	1.88
628788--628854	34	2.0	33	91	2	107	25	16	13	44	1.84
631008--631393	53	7.3	52	73	12	263	29	25	12	32	1.92
631114--631189	27	2.8	28	85	2	100	23	32	21	22	1.98
631172--631397	104	2.2	104	82	4	260	29	25	11	33	1.91
631377--631453	28	2.8	28	87	0	100	23	33	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631005--631501	264	1.9	264	91	3	822	28	26	13	31	1.93
636881--636907	13	2.1	13	100	0	54	29	14	14	40	1.86
638833--638905	33	2.2	33	97	0	137	32	20	24	21	1.97
640389--640425	13	2.8	13	91	0	56	40	16	10	32	1.83
646699--646758	19	3.2	19	81	6	77	33	16	15	35	1.90
654618--654655	15	2.5	15	91	0	58	7	2	13	76	1.11
654618--654655	20	1.9	20	88	0	58	7	2	13	76	1.11
658422--658458	2	18.5	2	100	0	74	48	0	0	51	1.00
674862--675085	57	3.9	56	75	11	165	48	11	12	27	1.75
674886--675250	58	6.3	58	76	8	255	49	12	11	26	1.74
675942--675983	14	2.9	14	82	17	50	4	21	0	73	1.01
677259--678320	354	3.0	354	93	0	1800	37	18	16	27	1.92
678738--678776	20	2.0	20	89	0	60	28	17	2	51	1.59
680523--680646	29	4.3	29	86	0	167	31	13	4	50	1.63
680524--680651	58	2.2	58	88	1	186	30	13	4	51	1.61
680511--680633	15	8.4	15	72	16	71	30	13	4	51	1.60
680552--680738	15	12.9	15	72	10	129	29	9	6	54	1.58
680555--680747	100	1.9	101	87	3	282	30	9	6	53	1.58
680568--680722	71	2.2	71	88	1	229	31	8	6	53	1.56
680568--680748	14	12.6	14	71	14	91	31	9	6	52	1.59
680655--680770	29	3.9	29	85	6	135	30	9	6	53	1.59
686814--686854	21	2.0	21	85	9	57	39	12	9	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686894--686964	20	3.6	19	77	7	70	40	16	12	29	1.86
686934--687070	53	2.6	53	96	1	247	37	18	17	27	1.93
687113--687167	21	2.5	22	94	5	103	27	23	10	38	1.88
687181--687209	14	2.1	14	100	0	58	27	24	6	41	1.80
689747--689877	66	2.0	66	83	5	167	22	10	17	48	1.78
694417--694443	13	2.1	13	100	0	54	29	14	14	40	1.86
696528--696570	20	2.1	20	82	4	50	11	30	41	16	1.83
703202--703228	13	2.1	13	100	0	54	29	14	14	40	1.86
704041--704254	97	2.2	97	83	1	259	37	12	22	27	1.90
706800--706825	13	2.0	13	100	0	52	30	15	15	38	1.88
706780--706843	32	2.0	33	87	9	96	29	14	15	40	1.86
707781--707880	49	2.0	49	84	5	128	49	14	10	27	1.74
708746--709107	105	3.5	105	77	5	358	37	14	23	24	1.93
708715--709107	52	7.5	52	77	8	341	36	15	23	24	1.94
708741--709118	156	2.4	157	77	9	419	37	14	23	24	1.93
709105--709344	32	7.7	32	78	10	241	23	16	28	31	1.96
709107--709344	90	2.5	95	80	10	260	23	16	28	31	1.97
709105--709336	122	1.9	122	85	5	326	24	15	28	31	1.96
709355--709796	30	15.2	28	73	13	145	31	13	27	26	1.94
709360--709796	59	7.5	60	73	9	242	32	13	28	26	1.94
709357--709600	28	8.4	29	70	15	112	33	12	27	26	1.92
709639--709798	30	5.4	30	84	4	198	28	12	32	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709620--709798	60	3.0	60	80	3	218	29	13	31	25	1.94
716119--716334	97	2.2	97	83	4	267	38	12	19	29	1.88
722436--722713	140	2.0	140	90	2	443	30	17	11	39	1.85
727846--727911	20	3.7	20	73	26	83	34	18	12	34	1.88
727846--727929	13	7.4	12	69	25	67	34	16	13	35	1.88
727847--727926	33	2.4	33	100	0	160	33	17	12	36	1.87
727978--728031	19	2.8	20	80	8	67	35	11	16	37	1.84
728015--728039	13	1.9	13	100	0	50	32	16	16	36	1.90
733050--733117	20	3.3	20	76	10	66	61	0	1	36	1.05
733662--733704	15	2.6	16	82	14	52	67	0	0	32	0.91
733722--733764	23	2.0	21	86	9	59	60	0	0	39	0.97
736033--736068	2	18.0	2	94	0	63	50	0	2	47	1.15
738210--738235	13	2.0	13	100	0	52	30	15	15	38	1.88
738190--738253	33	2.0	32	90	3	101	26	14	20	39	1.90
738369--738409	20	2.0	20	90	0	64	26	12	21	39	1.89
746995--747020	13	2.0	13	100	0	52	30	15	15	38	1.88
746975--747038	33	2.0	32	87	9	94	28	14	18	39	1.90
747080--747132	20	2.6	21	82	8	65	30	16	15	37	1.90
748992--749099	57	1.9	57	84	7	148	34	13	21	30	1.92
756301--756337	4	9.2	4	87	0	56	67	2	27	2	1.17
756443--756487	2	22.5	2	100	0	90	0	51	0	48	1.00
756596--756655	29	2.1	28	82	14	70	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756611--756665	29	2.0	28	82	10	69	54	1	0	43	1.10

Tables:   1   2   3   4

The End!