genome.fa.s2485.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2485
Parameters: 2 7 7 80 10 50 1000
Length:  359192

Tables:   1   2   3   4   

This is table  1  of  4  ( 409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7935--8006	20	3.6	20	83	3	83	41	11	12	34	1.78
9357--9395	2	19.5	2	100	0	78	48	0	0	51	1.00
11582--11611	15	2.1	14	93	6	51	30	0	6	63	1.20
12219--12273	27	2.0	29	85	7	78	29	10	12	47	1.76
13421--13477	17	3.1	17	68	18	51	36	8	8	45	1.66
14136--14179	3	14.7	3	100	0	88	65	0	0	34	0.93
14471--14520	25	2.0	25	85	14	68	44	2	0	54	1.11
14526--14587	18	3.3	18	80	12	70	45	0	0	54	0.99
14499--14592	41	2.3	41	82	14	113	44	0	0	55	0.99
14612--14677	15	4.7	15	72	11	50	66	1	4	27	1.20
14612--14710	41	2.4	39	79	17	105	68	1	4	26	1.13
18093--18175	42	2.0	43	95	2	150	42	8	15	33	1.77
23621--23701	39	2.1	39	88	0	117	59	4	16	19	1.55
24701--24743	21	2.0	21	91	8	70	41	0	0	58	0.98
24715--24781	35	1.9	35	82	11	84	49	0	0	50	1.00
24896--24952	22	2.5	21	79	20	62	43	0	0	56	0.99
24950--25001	21	2.5	21	78	6	52	55	0	1	42	1.10
25757--25786	11	2.6	12	89	10	53	70	0	0	30	0.88
25761--25788	11	2.5	11	100	0	56	64	0	0	35	0.94
26938--26977	19	2.2	19	90	4	64	57	0	0	42	0.98
38714--38761	24	2.0	25	91	4	80	60	0	14	25	1.34
39929--40001	30	2.6	27	80	18	85	57	0	1	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40262--40341	31	2.8	29	78	14	78	53	1	0	45	1.08
40300--40671	116	3.3	115	82	9	444	52	1	3	43	1.27
40404--40465	23	2.7	22	74	16	56	58	1	0	40	1.08
40580--40661	36	2.2	39	79	18	93	46	0	4	48	1.23
40666--40727	24	2.6	25	84	7	83	64	8	0	27	1.21
40398--40717	112	2.8	112	80	8	353	53	2	2	40	1.29
40666--40741	24	3.2	24	76	14	77	65	7	0	26	1.19
40966--41001	14	2.7	13	86	4	54	55	5	0	38	1.23
41011--41370	124	2.9	122	86	7	460	41	3	1	53	1.27
41827--42633	180	4.4	180	82	5	973	42	7	15	34	1.75
41827--42633	92	8.9	91	83	5	951	42	7	15	34	1.75
41855--42633	363	2.1	362	86	3	1077	42	7	15	34	1.75
42565--42704	68	2.0	70	86	6	196	45	8	16	29	1.77
42385--42872	254	2.0	246	79	8	520	43	7	15	33	1.75
46262--46329	35	1.9	35	82	5	84	57	0	2	39	1.14
46111--46763	291	2.2	292	87	3	927	47	6	8	37	1.60
46553--46686	42	3.1	42	66	22	105	57	2	2	37	1.26
47650--47746	14	6.6	15	70	16	69	37	1	1	60	1.10
47627--47772	6	24.0	6	67	18	54	36	2	1	59	1.18
48135--48169	16	2.1	17	89	10	54	48	0	5	45	1.26
49935--50027	26	3.7	24	80	15	100	56	1	1	40	1.13
49955--50026	13	5.6	14	75	15	68	56	0	1	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49935--50037	49	2.1	49	82	7	120	59	0	0	38	1.11
50788--50865	23	3.2	23	75	19	70	55	0	1	43	1.08
50776--50871	23	4.0	23	74	18	65	55	0	1	43	1.06
50851--50886	17	2.2	16	90	5	54	41	2	0	55	1.14
53895--53926	10	3.1	11	82	17	50	46	0	0	53	1.00
53894--53935	20	2.2	19	91	4	66	50	0	0	50	1.00
54230--54319	40	2.2	40	86	7	121	44	1	1	53	1.15
55327--55364	20	1.9	20	88	0	58	39	0	2	57	1.12
55370--55423	21	2.5	20	79	11	54	57	0	0	42	0.98
55639--55728	22	3.9	23	78	16	80	67	0	0	32	0.91
55639--55721	11	7.7	11	74	17	52	68	0	0	31	0.90
55666--55784	17	6.9	17	71	23	72	58	0	0	41	0.98
55641--55732	40	2.4	38	82	13	109	67	0	0	32	0.91
55638--55727	30	2.9	30	80	11	101	67	0	0	32	0.91
55661--55823	29	5.9	26	72	23	86	58	1	0	39	1.10
55693--55782	19	4.9	18	70	17	69	56	0	0	43	0.99
55959--55989	3	10.3	3	100	0	62	32	0	0	67	0.91
56110--56136	4	6.8	4	100	0	54	77	0	22	0	0.76
56159--56220	23	2.8	22	81	15	74	35	0	0	64	0.94
56159--56222	21	2.8	22	82	15	69	35	0	0	64	0.94
56326--56377	23	2.2	22	86	10	68	36	0	0	63	0.95
56335--56380	16	2.9	16	78	12	51	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56533--56573	19	2.2	19	86	0	55	41	0	2	56	1.13
57552--57591	18	2.2	18	86	8	55	70	0	30	0	0.88
57552--57590	19	2.0	19	90	5	60	69	0	30	0	0.89
57693--57743	20	2.4	21	80	9	59	27	1	3	66	1.20
57710--57761	20	2.6	21	85	11	65	25	0	1	73	0.94
57709--57762	17	3.0	17	75	19	56	24	0	1	74	0.92
57961--57998	16	2.4	16	86	0	58	57	2	0	39	1.12
58106--58144	16	2.4	17	82	4	53	48	0	0	51	1.00
58109--58163	20	3.0	20	79	10	64	50	0	0	49	1.00
58296--58337	12	3.6	12	80	6	50	78	0	16	4	0.91
58277--58336	24	2.7	23	80	14	63	78	0	18	3	0.89
58349--58387	20	2.0	20	85	5	53	38	2	2	56	1.27
58705--58744	15	2.5	16	88	8	55	57	0	0	42	0.98
58705--58747	16	2.6	17	85	10	63	55	0	0	44	0.99
59027--59140	57	2.0	59	82	3	142	46	5	10	37	1.61
59189--59240	6	8.7	6	87	4	61	25	1	0	73	0.94
59189--59240	18	2.8	18	85	2	68	25	1	0	73	0.94
59184--59240	24	2.4	24	91	2	89	24	1	0	73	0.92
59329--59369	19	2.2	19	86	8	57	34	0	4	60	1.18
59516--59578	34	1.9	31	84	9	81	26	3	9	60	1.43
59639--59672	17	2.0	17	94	0	59	32	0	0	67	0.91
60941--60997	21	2.9	20	78	17	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60935--61015	28	2.9	30	75	14	82	46	0	0	53	1.00
60958--61016	26	2.3	24	78	18	66	45	0	0	54	0.99
63193--63229	18	2.1	18	90	10	58	2	13	0	83	0.74
63195--63232	12	3.2	12	85	7	51	2	10	0	86	0.66
63331--63369	20	2.0	20	89	0	60	51	0	0	48	1.00
63373--63423	10	5.1	10	75	15	52	35	0	0	64	0.94
63362--63434	11	6.0	13	72	16	59	41	0	0	58	0.98
63374--63434	18	3.4	18	75	22	65	37	0	0	62	0.96
63380--63434	17	3.0	20	74	17	64	38	0	0	61	0.96
63338--63411	24	3.2	25	73	19	70	44	0	0	55	0.99
64031--64093	13	4.7	13	76	7	54	42	6	12	38	1.68
64037--64093	28	2.0	28	96	0	105	40	5	14	40	1.68
66621--66680	17	3.6	17	75	20	63	33	1	16	48	1.56
66635--66680	16	2.8	16	83	12	58	34	0	19	45	1.51
66666--66756	30	3.0	30	82	4	112	46	1	13	39	1.50
66851--66917	16	3.7	18	78	7	57	38	1	1	58	1.17
66853--66923	19	3.9	19	72	20	62	38	1	1	59	1.15
68347--68379	3	11.0	3	93	0	57	63	3	33	0	1.10
71694--71736	10	4.2	10	79	5	50	51	0	0	48	1.00
72712--72755	17	2.8	15	83	16	54	40	0	2	56	1.11
72729--72776	5	9.0	5	80	11	51	37	0	0	62	0.95
72748--72785	17	2.2	18	85	4	51	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73090--73142	3	17.3	3	86	3	70	26	1	1	69	1.09
77009--77043	2	17.5	2	93	0	61	48	0	2	48	1.16
81087--81152	12	5.5	12	74	0	51	30	40	1	27	1.65
84047--84085	20	2.0	20	90	10	62	64	0	0	35	0.94
84070--84112	22	2.0	21	86	4	59	44	0	0	55	0.99
84717--84754	20	1.9	20	84	10	51	42	0	5	52	1.24
84768--84805	20	1.9	20	88	0	58	65	0	2	31	1.06
86915--86981	33	2.0	33	88	0	98	17	31	14	35	1.91
87993--88063	12	5.8	13	70	12	51	61	0	0	38	0.96
88529--88567	18	2.2	18	86	9	53	48	0	0	51	1.00

Tables:   1   2   3   4