genome.fa.s2485.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2485
Parameters: 2 7 7 80 10 50 1000
Length:  359192

Tables:   1   2   3   4   

This is table  2  of  4  ( 409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88551--88648	11	8.2	12	72	17	55	56	0	0	43	0.99
88563--88622	18	3.3	18	75	13	61	51	0	0	48	1.00
88622--88658	11	3.4	11	92	0	56	72	0	0	27	0.84
89624--89789	84	2.0	84	89	3	255	47	3	2	46	1.30
89655--89780	42	3.0	42	64	6	103	53	3	1	42	1.26
91170--91194	13	1.9	13	100	0	50	32	0	0	68	0.90
91233--91265	15	2.4	14	90	10	50	57	0	0	42	0.98
91207--91276	36	1.9	36	82	5	88	54	2	0	42	1.15
94212--94270	17	3.7	16	86	6	84	59	0	0	40	0.97
94175--94268	33	2.9	32	77	4	98	56	4	0	39	1.19
94212--94263	18	3.1	17	91	5	79	59	0	0	40	0.97
94212--94285	15	4.4	17	80	19	84	58	0	0	41	0.98
94154--94284	17	7.9	16	68	18	63	56	3	0	39	1.17
96367--96606	97	2.5	96	89	6	376	30	12	28	27	1.93
97992--98209	114	1.9	115	91	2	359	33	11	16	37	1.85
98516--99149	336	1.9	336	100	0	1268	22	18	7	50	1.72
99246--99281	17	2.0	19	89	10	58	5	19	2	72	1.17
101726--101795	19	3.5	20	79	14	65	50	0	0	50	1.00
101728--101777	20	2.6	19	84	9	57	48	0	0	52	1.00
103776--103814	2	19.5	2	100	0	78	48	0	0	51	1.00
107919--107947	14	2.1	14	100	0	58	20	13	44	20	1.85
122356--122381	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122392--122440	17	3.1	16	83	16	59	61	0	0	38	0.96
122529--122587	22	2.9	21	75	9	68	67	3	0	28	1.06
123484--123525	16	2.6	16	78	14	59	47	0	0	52	1.00
123742--123775	10	3.1	11	91	8	52	73	0	0	26	0.83
129088--129127	13	2.7	15	88	11	57	35	20	15	30	1.93
131589--131649	13	4.7	13	83	0	77	37	14	14	32	1.87
131586--131649	26	2.5	26	94	0	119	37	14	15	32	1.87
136123--136168	3	15.3	3	81	0	56	28	28	0	43	1.55
136122--136169	12	4.0	12	91	0	78	27	27	0	45	1.54
139755--139826	28	2.6	28	88	0	99	23	19	34	22	1.96
139815--139984	52	3.3	50	79	11	182	32	12	24	29	1.93
139958--140039	27	3.0	28	82	10	98	26	21	29	21	1.99
142458--142483	13	2.0	13	100	0	52	38	15	15	30	1.88
142437--142503	33	2.0	33	88	0	98	43	16	14	25	1.86
142523--142590	19	3.9	18	76	23	83	38	14	11	35	1.83
142545--142569	13	1.9	13	100	0	50	32	16	16	36	1.90
142526--142588	32	2.0	32	96	0	117	36	15	12	34	1.86
142646--142702	21	2.7	21	97	0	105	36	19	10	33	1.86
142706--142758	1	53.0	1	94	0	79	3	1	0	94	0.37
142704--142761	28	2.1	28	100	0	116	10	3	0	86	0.69
143349--143974	55	11.4	55	90	3	951	20	19	30	28	1.97
143349--143974	165	3.8	165	96	0	1103	20	19	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144952--144999	13	3.6	13	88	2	69	0	4	10	85	0.73
144951--144995	18	2.6	18	85	3	65	0	4	8	86	0.69
157525--157596	28	2.6	28	88	0	99	23	19	34	22	1.96
157585--157754	52	3.3	50	79	11	182	32	12	24	29	1.93
157728--157809	27	3.0	28	82	10	98	26	21	29	21	1.99
160228--160253	13	2.0	13	100	0	52	38	15	15	30	1.88
160207--160273	33	2.0	33	88	0	98	43	16	14	25	1.86
160293--160360	19	3.9	18	76	23	83	38	14	11	35	1.83
160315--160339	13	1.9	13	100	0	50	32	16	16	36	1.90
160296--160358	32	2.0	32	96	0	117	36	15	12	34	1.86
160416--160472	21	2.7	21	97	0	105	36	19	10	33	1.86
160476--160500	1	25.0	1	100	0	50	0	0	0	100	0.00
161216--161251	17	2.1	17	100	0	72	16	5	36	41	1.72
163758--163865	21	5.2	21	61	12	62	27	9	23	39	1.85
163740--163870	41	3.2	41	98	0	253	25	9	21	42	1.84
163779--163845	20	3.3	20	64	12	55	23	8	20	46	1.79
164869--164924	26	2.2	26	96	3	105	33	3	16	46	1.64
165329--165430	54	1.9	53	82	5	127	53	0	0	45	1.06
165979--166012	14	2.5	14	90	4	52	47	0	0	52	1.00
166241--166333	18	4.8	20	72	24	65	46	0	0	53	1.00
166256--166342	18	4.8	18	69	10	61	45	0	0	54	1.00
166318--166377	14	4.4	13	76	14	50	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166297--166376	16	5.4	16	75	11	57	43	0	0	56	0.99
166335--166374	14	2.9	14	84	0	53	40	0	0	60	0.97
174390--174429	2	20.5	2	84	5	55	47	2	2	47	1.29
174451--174482	2	16.0	2	100	0	64	50	0	0	50	1.00
175093--175123	16	1.9	16	93	0	53	54	22	12	9	1.67
175345--175388	22	2.0	22	86	8	63	52	6	4	36	1.49
178364--178405	21	1.9	23	85	9	61	66	0	0	33	0.92
179588--179637	16	3.1	16	85	0	64	40	26	18	16	1.90
179879--180245	187	1.9	191	87	5	550	43	7	5	43	1.55
180570--180607	2	19.0	2	100	0	76	50	0	0	50	1.00
180781--180812	15	2.1	16	88	11	50	59	0	0	40	0.97
180794--180880	43	2.2	40	75	17	90	50	1	0	48	1.08
181140--181182	15	2.9	15	80	13	52	67	0	0	32	0.91
181141--181192	26	2.0	26	85	7	70	65	0	0	34	0.93
181229--181262	15	2.2	16	89	5	52	67	0	0	32	0.91
181523--181553	5	6.2	5	100	0	62	61	0	0	38	0.96
181569--181607	18	2.2	17	86	9	51	64	0	2	33	1.08
181593--181687	19	4.9	20	68	21	60	49	0	1	49	1.07
181822--181863	16	2.4	19	80	15	54	54	2	2	40	1.26
182358--182412	28	2.0	28	85	7	76	47	0	0	52	1.00
182354--182441	24	3.5	25	78	10	83	51	0	0	48	1.00
182785--182904	16	7.8	16	66	23	69	40	0	0	58	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182786--182898	28	4.0	26	74	20	86	40	0	0	58	1.04
182792--182908	32	3.8	32	73	17	95	41	0	0	57	1.05
182792--182903	21	5.7	19	70	16	68	41	0	0	58	1.04
182827--182898	27	2.7	27	81	12	78	40	1	0	58	1.07
183011--183099	16	5.4	16	71	21	69	43	0	0	56	0.99
183011--183078	16	4.2	17	80	17	74	44	0	0	55	0.99
183034--183084	14	3.4	14	78	19	57	50	0	0	49	1.00
183021--183103	33	2.5	32	88	3	112	45	0	0	54	0.99
183013--183103	32	2.7	33	83	8	121	45	0	0	54	0.99
183013--183136	38	3.5	37	77	15	102	41	0	0	57	1.10
183088--183140	11	4.9	11	76	21	58	33	1	1	62	1.17
184353--184424	6	11.7	6	70	21	51	38	0	1	59	1.06
184346--184404	21	2.8	21	72	12	57	33	0	1	64	1.04
184347--184425	8	10.0	8	71	16	58	39	0	1	59	1.06
184357--184483	37	3.4	38	79	16	115	42	0	0	56	1.04
186235--186272	16	2.5	16	91	8	62	44	0	0	55	0.99
186342--186389	20	2.4	21	80	16	57	66	0	2	31	1.03
186526--186571	22	2.0	22	83	4	56	47	2	0	50	1.13
188777--188831	19	2.8	20	79	15	62	61	0	0	38	0.96
188813--188879	8	7.4	8	75	21	53	58	0	0	41	0.98
188781--188876	29	3.3	28	80	12	104	59	0	0	40	0.97
188838--188890	19	2.8	19	88	2	72	58	1	1	37	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191307--191351	2	22.5	2	100	0	90	48	0	0	51	1.00
191548--191611	31	2.0	32	82	8	78	48	1	1	48	1.20
191807--191846	2	20.0	2	100	0	80	50	0	0	50	1.00
192206--192246	15	2.6	16	82	14	50	19	0	12	68	1.21
193308--193337	14	2.1	14	93	0	51	76	0	0	23	0.78
193326--193366	22	1.9	21	90	5	64	53	0	0	46	1.00
196445--196484	20	2.0	20	85	9	55	52	0	0	47	1.00
204496--204523	13	2.2	13	100	0	56	39	17	14	28	1.89
204478--204543	33	2.0	33	85	5	89	42	13	13	30	1.83
204575--204646	19	3.7	19	87	5	99	33	16	12	37	1.86

Tables:   1   2   3   4