genome.fa.s2485.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2485
Parameters: 2 7 7 80 10 50 1000
Length:  359192

Tables:   1   2   3   4   

This is table  4  of  4  ( 409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321975--322000	2	13.0	2	100	0	52	50	0	0	50	1.00
322313--322369	27	2.1	27	83	6	71	38	0	1	59	1.08
322339--322383	11	4.2	11	78	21	51	33	2	0	64	1.06
322333--322385	19	2.8	19	80	5	63	33	1	0	64	1.05
322323--322386	27	2.4	26	85	10	85	37	1	0	60	1.06
322323--322401	27	3.0	25	77	15	72	36	1	2	59	1.19
322709--322748	21	1.9	21	84	0	53	42	7	0	50	1.30
324444--324473	6	5.0	6	95	0	51	46	0	0	53	1.00
327381--327421	21	1.9	22	85	14	59	48	12	4	34	1.62
327518--327589	20	3.6	20	70	22	62	48	0	0	51	1.00
327581--327626	19	2.3	20	82	14	60	58	2	0	39	1.10
328330--328407	41	1.9	41	84	5	104	39	11	3	44	1.59
329048--329081	2	17.0	2	93	0	59	50	2	0	47	1.16
329566--329822	137	1.9	140	83	5	344	29	7	15	47	1.73
330723--330767	20	2.2	20	84	4	54	40	13	17	28	1.88
333304--333566	79	3.3	78	76	11	225	31	20	9	38	1.84
333709--333757	23	2.2	22	81	3	53	18	4	12	65	1.41
338392--338416	2	12.5	2	100	0	50	52	0	0	48	1.00
338971--339001	6	5.3	6	92	7	55	32	0	0	67	0.91
338958--339025	18	3.8	18	76	21	63	35	0	2	61	1.11
339032--339094	22	2.8	22	78	7	65	50	0	0	49	1.00
339032--339085	22	2.3	24	81	6	67	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339096--339134	16	2.5	16	87	4	53	56	2	0	41	1.13
339147--339239	35	2.8	33	79	15	104	53	0	0	46	1.00
339171--339229	30	2.0	30	83	9	77	50	0	0	49	1.00
340395--340465	27	2.7	27	76	21	78	61	1	1	35	1.13
342707--342760	22	2.5	21	78	6	63	55	5	0	38	1.23
343446--343491	21	2.2	21	88	3	67	43	0	8	47	1.34
344046--344078	16	2.1	16	88	5	50	54	0	24	21	1.45
344262--344307	23	2.1	21	84	8	56	39	0	0	60	0.97
347076--347132	30	1.9	29	89	3	87	47	0	0	52	1.00
347083--347170	30	3.0	30	82	8	85	50	0	0	50	1.00
347708--347740	14	2.3	15	94	5	59	54	0	0	45	0.99
348226--348272	13	3.7	13	80	2	51	31	4	2	61	1.27
348460--348490	3	10.3	3	100	0	62	67	0	0	32	0.91
348544--348632	27	3.3	26	69	18	74	57	0	1	41	1.06
348954--349000	23	2.0	24	88	8	71	65	8	4	21	1.37
349602--349644	9	4.4	9	78	16	50	2	13	0	83	0.74
349603--349649	19	2.5	17	83	16	58	2	17	0	80	0.80
349602--349640	21	1.9	20	89	5	60	2	15	0	82	0.79
349774--349886	59	1.9	59	83	5	149	49	7	12	30	1.67
350519--350612	34	2.8	33	79	12	84	63	3	3	29	1.25
350619--350666	16	3.2	15	77	19	55	0	20	0	79	0.74
351002--351043	2	22.0	2	88	9	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351077--351111	18	1.9	18	100	0	70	45	0	14	40	1.45
352397--352440	20	2.2	20	84	8	54	45	18	9	27	1.79
354011--354054	18	2.4	18	88	0	61	43	2	38	15	1.60
356944--356994	24	2.2	23	82	10	59	35	5	13	45	1.68
359003--359033	16	1.9	16	93	0	53	29	0	29	41	1.56

Tables:   1   2   3   4

The End!