genome.fa.s258.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold258
Parameters: 2 7 7 80 10 50 1000
Length:  5730937

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  11  of  25  ( 2900 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2314526--2314560	16	2.1	17	89	5	54	31	0	0	68	0.90
2314549--2314589	19	2.2	19	86	8	57	39	0	0	60	0.96
2315401--2315456	3	18.7	3	100	0	112	32	0	0	67	0.91
2317404--2317466	22	2.9	21	85	7	72	42	0	1	55	1.09
2317405--2317485	26	3.1	25	70	24	69	44	0	1	54	1.08
2318236--2318260	2	12.5	2	100	0	50	48	0	0	52	1.00
2320330--2320357	2	14.0	2	100	0	56	50	0	0	50	1.00
2323235--2323267	2	16.5	2	100	0	66	48	0	0	51	1.00
2325073--2325116	23	1.9	23	85	0	61	50	0	2	47	1.13
2325071--2325134	29	2.2	29	81	15	71	48	0	1	50	1.10
2351095--2351138	23	2.0	23	90	4	72	52	0	0	47	1.00
2357521--2357565	21	2.1	21	84	8	56	42	0	2	55	1.12
2357570--2357668	31	3.0	33	78	14	107	39	0	0	60	0.97
2357568--2357662	23	3.9	24	75	21	74	38	0	0	61	0.96
2357730--2357762	17	1.9	18	88	11	52	48	0	6	45	1.27
2358740--2358778	4	9.8	4	100	0	78	23	0	0	76	0.78
2364130--2364155	1	26.0	1	100	0	52	0	0	0	100	0.00
2365268--2365305	18	2.1	18	90	0	58	15	26	36	21	1.93
2368279--2368308	2	15.0	2	100	0	60	0	50	0	50	1.00
2371871--2371911	22	1.9	21	85	5	55	29	17	7	46	1.74
2372756--2372796	2	20.5	2	100	0	82	48	0	51	0	1.00
2376931--2376976	18	2.5	18	85	3	56	19	26	34	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2378342--2378413	11	7.0	10	70	20	51	38	2	4	54	1.34
2378363--2378413	21	2.5	20	80	6	57	37	3	3	54	1.37
2378526--2378565	21	1.9	21	90	10	64	45	5	2	47	1.38
2378652--2378726	39	1.9	39	97	0	141	42	5	5	46	1.49
2378653--2378736	39	2.2	39	89	4	125	45	5	5	42	1.53
2378978--2379018	2	21.0	2	95	5	75	48	0	0	51	1.00
2379503--2379537	2	17.5	2	100	0	70	48	0	0	51	1.00
2380514--2380545	2	16.0	2	100	0	64	0	50	0	50	1.00
2381970--2382010	22	1.9	22	85	5	57	26	2	0	70	0.99
2383709--2383800	46	2.0	46	86	0	130	43	22	19	14	1.87
2385040--2385072	16	1.9	18	88	11	52	27	0	0	72	0.85
2385032--2385081	26	1.9	26	91	0	82	28	2	0	70	0.99
2385866--2385906	21	2.0	21	100	0	82	34	17	14	34	1.90
2386400--2386584	99	1.9	100	83	2	246	40	9	6	43	1.63
2387582--2387612	7	4.6	7	92	8	55	87	0	0	12	0.55
2387582--2387612	13	2.4	13	100	0	62	87	0	0	12	0.55
2390506--2390659	76	2.0	76	87	5	222	16	16	22	44	1.87
2393332--2393364	13	2.4	14	90	5	50	42	21	12	24	1.86
2401221--2401250	12	2.6	11	94	5	51	30	0	0	70	0.88
2401228--2401284	29	2.0	29	89	3	89	31	0	0	68	0.90
2401223--2401287	28	2.3	28	84	5	87	30	0	0	69	0.89
2403945--2403971	2	13.5	2	100	0	54	0	0	48	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2406185--2406210	1	26.0	1	100	0	52	0	100	0	0	0.00
2409518--2409571	27	2.0	27	100	0	108	25	33	22	18	1.97
2417740--2417779	21	1.9	21	85	10	55	35	0	2	62	1.09
2418655--2418702	20	2.3	20	79	10	53	50	2	8	39	1.44
2419086--2419127	21	2.0	21	86	13	61	40	0	0	59	0.97
2419080--2419154	22	3.2	22	69	20	62	49	0	0	50	1.00
2420693--2420717	2	12.5	2	100	0	50	52	0	0	48	1.00
2420492--2420910	223	1.9	220	87	2	606	32	13	14	39	1.85
2424541--2424632	10	9.3	10	70	21	52	35	1	0	63	1.02
2425723--2425780	30	1.9	31	82	10	75	51	1	0	46	1.11
2427214--2427265	13	4.2	13	79	16	65	65	0	0	34	0.93
2427214--2427272	5	12.4	5	72	16	54	64	0	0	35	0.94
2427220--2427277	23	2.3	23	85	11	71	65	0	0	34	0.93
2427246--2427276	14	2.2	14	94	0	53	67	0	0	32	0.91
2427216--2427267	19	2.8	20	80	11	65	65	0	0	34	0.93
2428437--2428469	2	16.5	2	100	0	66	51	0	48	0	1.00
2431353--2431392	2	20.0	2	100	0	80	50	0	0	50	1.00
2433111--2433144	17	1.9	18	88	5	52	52	11	0	35	1.38
2434118--2434149	2	16.0	2	100	0	64	50	0	0	50	1.00
2434773--2434805	14	2.3	15	89	5	50	36	6	0	57	1.23
2435151--2435192	2	21.0	2	95	0	75	47	0	0	52	1.00
2436221--2436271	21	2.5	20	78	9	57	74	3	1	19	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2436255--2436330	26	2.9	25	75	7	62	57	5	5	31	1.43
2436381--2436442	13	4.7	13	71	11	54	8	16	0	75	1.02
2436522--2436565	18	2.3	20	78	21	51	52	2	2	43	1.26
2437149--2437205	28	2.0	28	100	0	114	36	14	10	38	1.80
2437904--2437936	17	1.9	17	88	11	50	63	0	0	36	0.95
2437884--2437942	12	4.7	12	74	22	50	67	1	0	30	1.00
2438200--2438257	21	2.8	21	89	2	82	37	1	0	60	1.07
2438215--2438249	18	2.0	17	88	5	52	37	0	0	62	0.95
2442097--2442143	2	23.5	2	91	0	76	46	2	2	48	1.25
2443917--2443971	19	2.7	21	75	11	60	69	1	1	27	1.09
2446392--2447065	339	2.0	339	92	0	1116	32	18	16	32	1.93
2448997--2449029	2	16.5	2	100	0	66	51	0	0	48	1.00
2449372--2449405	2	17.0	2	93	0	59	50	47	0	2	1.16
2450749--2450773	13	1.9	13	100	0	50	48	8	12	32	1.69
2453134--2453163	2	15.0	2	100	0	60	50	0	50	0	1.00
2455370--2455421	20	2.7	18	81	18	61	57	0	0	42	0.98
2455370--2455416	22	2.3	20	85	10	60	57	0	0	42	0.98
2468748--2468804	25	2.3	25	81	6	71	29	1	3	64	1.20
2478192--2478235	23	1.9	23	90	0	70	54	4	0	40	1.21
2485555--2485587	2	16.5	2	100	0	66	48	0	0	51	1.00
2496046--2496071	2	13.0	2	100	0	52	50	50	0	0	1.00
2496091--2496311	109	2.0	111	95	1	401	35	13	18	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2501632--2501680	20	2.4	21	80	10	66	51	8	4	36	1.51
2501672--2501721	21	2.4	21	89	0	73	50	4	4	42	1.40
2501795--2501884	10	9.1	10	73	19	57	54	3	2	40	1.29
2501795--2501870	21	3.8	20	76	8	75	53	3	1	40	1.27
2503340--2503387	14	3.6	14	84	13	57	60	0	0	39	0.97
2503348--2503400	14	3.6	15	78	19	58	66	0	0	33	0.92
2503340--2503400	25	2.4	25	83	8	70	63	0	0	36	0.94
2505702--2505747	23	1.9	23	82	8	56	52	0	0	47	1.00
2506526--2506567	16	2.4	18	80	11	52	64	7	0	28	1.20
2507001--2507032	2	16.0	2	100	0	64	50	0	0	50	1.00
2509006--2509038	2	16.5	2	100	0	66	48	0	0	51	1.00
2511781--2511809	2	14.5	2	100	0	58	48	0	0	51	1.00
2518787--2518867	29	2.9	28	78	10	85	49	0	7	43	1.30
2518793--2518867	27	2.5	30	81	10	84	46	0	8	45	1.32
2525504--2525561	26	2.2	25	84	6	71	77	0	5	17	0.94
2525664--2525714	24	2.0	24	81	7	57	49	0	3	47	1.20
2525698--2525774	23	3.2	24	78	9	77	51	1	1	45	1.17
2526046--2526087	22	1.9	22	90	0	66	66	2	0	30	1.04
2526470--2526510	2	20.5	2	100	0	82	48	0	0	51	1.00
2526795--2526844	21	2.5	21	83	6	68	54	6	4	36	1.44
2526967--2526996	15	1.9	16	93	6	53	43	6	6	43	1.57
2529562--2529662	32	3.2	31	83	6	116	61	0	0	37	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2529612--2529672	18	3.7	18	70	26	62	59	0	0	40	0.98
2529562--2529685	32	3.9	32	78	8	112	61	0	0	37	1.02
2530516--2530550	16	2.2	16	100	0	70	51	5	14	28	1.65
2533633--2533695	23	2.8	22	76	9	65	49	1	0	49	1.10
2533846--2533882	2	19.0	2	94	5	67	48	0	0	51	1.00
2534319--2534354	2	18.0	2	94	0	63	47	0	2	50	1.15
2538744--2538807	27	2.4	27	86	5	94	54	0	0	45	0.99
2540265--2540334	17	3.8	18	74	9	61	45	0	1	52	1.09
2540329--2540368	19	2.0	20	85	4	55	50	0	0	50	1.00
2554802--2554855	26	2.2	24	83	6	63	50	5	3	40	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25