Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold258
Parameters: 2 7 7 80 10 50 1000
Length:  5730937

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2900 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5702547--5702662
16
7.1
16
69
19
62
31
0
1
67
1.01
5702622--5702679
19
3.0
19
87
7
73
32
1
1
63
1.14
5704192--5704218
14
1.9
14
100
0
54
66
0
0
33
0.92
5705650--5705688
13
3.1
13
88
3
53
53
0
0
46
1.00
5706459--5706489
3
10.3
3
100
0
62
32
0
0
67
0.91
5706914--5706961
21
2.3
21
82
3
53
47
0
2
50
1.12
5706931--5706978
16
2.8
17
78
9
53
54
0
0
45
0.99
5706952--5706995
18
2.4
19
84
3
54
52
0
6
40
1.28
5707251--5707290
19
2.0
21
85
9
57
50
5
2
42
1.37
5708020--5708061
16
2.7
15
85
10
50
28
0
0
71
0.86
5711440--5711494
11
5.4
11
79
14
64
65
0
1
32
1.03
5711440--5711520
28
2.8
30
83
11
105
64
0
1
34
1.02
5711440--5711522
10
8.3
10
73
20
59
63
0
1
34
1.02
5712008--5712041
3
11.3
3
100
0
68
67
0
0
32
0.91
5712213--5712247
17
2.1
17
89
5
54
42
0
2
54
1.15
5713444--5713491
16
2.9
17
77
20
57
50
2
0
47
1.12
5724534--5724574
19
2.1
20
90
4
66
12
17
9
60
1.57
5725074--5725122
24
2.0
25
88
11
75
55
0
6
38
1.25
5726673--5726697
10
2.5
10
100
0
50
92
0
8
0
0.40
5727156--5727206
24
2.1
24
100
0
102
35
7
0
56
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!