genome.fa.s262.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold262
Parameters: 2 7 7 80 10 50 1000
Length:  1141274

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 957 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118222--118271	15	3.4	15	77	5	66	34	0	0	66	0.92
118457--118497	20	2.2	19	83	12	50	26	2	4	65	1.25
119264--119324	11	5.6	11	75	11	63	63	0	3	32	1.10
119265--119320	16	3.5	16	75	0	58	66	0	3	30	1.09
119925--119952	2	14.0	2	100	0	56	50	0	0	50	1.00
120351--120385	17	2.0	18	88	5	54	31	2	2	62	1.24
120402--120450	24	2.0	25	84	7	66	36	0	0	63	0.95
121805--121829	6	4.2	6	100	0	50	0	16	0	84	0.63
122177--122248	35	2.0	38	84	10	98	50	0	0	50	1.00
122232--122284	10	4.8	11	77	13	56	50	0	0	49	1.00
122550--122589	21	1.9	21	94	0	71	45	0	0	55	0.99
123639--123704	27	2.4	27	87	2	96	66	0	0	33	0.92
124004--124042	20	2.0	19	90	5	60	58	0	0	41	0.98
124092--124117	6	4.3	6	100	0	52	46	0	0	53	1.00
124743--124769	5	5.4	5	100	0	54	81	0	0	18	0.69
125776--125821	14	3.5	13	91	8	67	34	0	0	65	0.93
128672--128702	15	2.0	16	93	6	55	61	0	0	38	0.96
128678--128765	31	2.6	31	76	16	79	61	2	1	35	1.16
129542--129567	2	13.0	2	100	0	52	50	0	0	50	1.00
130241--130281	3	13.7	3	100	0	82	31	0	0	68	0.90
130920--130970	25	2.0	26	92	3	86	23	17	15	43	1.88
140215--140255	21	2.0	21	90	4	66	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140208--140255	12	4.2	12	73	24	50	47	0	0	52	1.00
140219--140346	47	2.8	45	73	17	113	47	0	2	50	1.14
140316--140378	26	2.4	26	81	7	74	39	0	0	60	0.97
140712--140765	26	2.2	24	86	6	72	38	0	0	61	0.96
140722--140773	20	2.6	21	82	14	65	40	0	0	59	0.97
145981--146031	18	2.7	19	75	19	54	47	0	3	49	1.20
147321--147353	3	11.0	3	100	0	66	66	0	0	33	0.92
147437--147469	16	2.1	15	94	5	57	36	0	0	63	0.95
149598--149635	20	1.9	20	88	0	58	0	2	13	84	0.73
150406--150470	14	4.5	15	74	18	50	52	1	0	46	1.10
150371--150441	16	4.2	16	70	19	54	40	0	0	59	0.98
150741--150788	22	2.2	22	84	0	60	41	0	0	58	0.98
150762--150822	18	3.6	16	75	16	59	40	0	0	59	0.98
150751--150810	27	2.2	26	82	8	75	41	0	0	58	0.98
150736--150824	38	2.4	36	84	5	106	41	0	0	58	0.98
150752--150824	36	1.9	39	83	10	98	42	0	0	57	0.98
152445--152496	20	2.6	19	79	11	50	42	3	1	51	1.31
154119--154188	12	5.8	12	73	8	61	58	4	0	37	1.18
154119--154187	24	2.8	24	77	2	75	59	4	0	36	1.17
154155--154191	18	2.1	18	90	5	58	67	2	0	29	1.04
154433--154496	28	2.4	27	80	14	73	23	9	4	62	1.44
159141--159181	21	2.0	20	90	9	64	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159600--159651	21	2.5	20	73	11	52	57	0	1	40	1.10
161244--161356	41	2.8	41	83	0	127	19	18	23	38	1.93
163292--163331	9	4.3	10	78	15	50	30	0	0	70	0.88
163620--163672	19	2.9	18	75	13	54	56	0	0	43	0.99
170444--170516	33	2.3	32	77	13	80	46	0	2	50	1.15
170678--170728	25	2.0	26	85	11	70	35	0	0	64	0.94
173898--173940	16	2.8	16	89	3	70	67	0	9	23	1.19
174154--174213	31	1.9	31	93	0	102	58	0	0	41	0.98
174153--174208	14	3.4	18	69	23	59	57	0	0	42	0.99
177027--177095	20	3.5	20	75	20	74	56	0	0	43	0.99
178479--178524	18	2.7	16	81	15	56	50	0	0	50	1.00
186501--186553	5	11.4	5	93	6	62	22	0	0	77	0.77
186502--186547	4	10.5	4	97	2	56	21	0	0	78	0.76
186706--186762	29	1.9	30	86	10	82	63	0	0	36	0.95
186705--186762	31	1.9	30	89	10	91	63	0	0	36	0.94
186982--187023	10	4.2	10	79	11	50	50	0	0	50	1.00
190279--190351	36	2.0	36	97	0	137	27	13	27	31	1.94
191677--191751	34	2.3	32	80	10	82	44	0	4	52	1.20
192831--192872	2	21.0	2	95	0	75	50	2	0	47	1.14
196149--196260	24	4.7	24	69	14	88	50	4	1	42	1.32
196130--196265	47	2.9	47	80	10	159	52	3	2	41	1.31
196331--196373	17	2.5	17	88	7	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196971--197004	2	17.0	2	100	0	68	50	0	0	50	1.00
197719--198070	179	2.0	180	83	3	449	27	11	21	38	1.88
204685--204732	23	2.1	23	100	0	96	16	8	35	39	1.79
208606--208649	20	2.2	20	84	8	54	50	0	0	50	1.00
209220--209256	8	4.3	9	86	10	51	32	0	0	67	0.91
209210--209257	17	2.9	16	81	6	51	33	0	0	66	0.92
210054--210115	22	2.7	24	80	10	74	27	4	4	62	1.36
211181--211261	24	3.2	25	76	11	76	43	1	0	55	1.07
211179--211253	32	2.5	31	80	18	88	44	1	0	54	1.08
211188--211253	32	2.1	31	86	8	89	45	1	0	53	1.09
211836--211873	19	2.0	19	85	10	51	50	5	2	42	1.39
212868--212894	4	6.8	4	100	0	54	51	0	0	48	1.00
213350--213418	27	2.6	27	69	13	63	57	0	0	42	0.98
214795--214837	16	2.7	16	81	0	50	48	18	2	30	1.60
216629--216666	10	3.9	10	83	16	53	50	0	0	50	1.00
220446--220474	2	14.5	2	100	0	58	51	0	0	48	1.00
220761--220811	25	2.0	25	96	0	93	25	3	15	54	1.58
224617--224652	17	2.2	17	95	5	65	41	0	0	58	0.98
226448--226510	31	2.1	30	93	3	108	60	1	7	30	1.35
227175--227204	2	14.5	2	93	6	51	46	0	3	50	1.18
228476--228605	18	7.6	18	72	20	100	40	0	0	60	0.97
228480--228604	26	4.5	27	74	20	82	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228489--228524	16	2.2	17	90	5	56	41	0	0	58	0.98
228529--228596	22	2.9	22	75	21	66	38	0	0	61	0.96
228501--228559	16	3.6	16	74	19	59	44	0	0	55	0.99
228477--228579	31	3.2	31	87	9	136	41	0	0	58	0.98
228532--228643	23	4.7	24	71	15	79	41	0	0	58	0.98
228477--228601	66	1.9	65	82	9	155	40	0	0	60	0.97
228485--228617	48	2.6	48	77	11	126	39	0	0	60	0.97
228581--228644	27	2.5	24	82	12	74	42	0	0	57	0.98
228696--228792	33	2.8	34	81	7	115	45	0	4	50	1.20
228797--228856	28	2.1	30	84	6	79	55	0	3	41	1.16
228838--228893	14	4.4	12	75	20	51	46	0	1	51	1.11
228846--228887	14	3.2	13	87	12	59	38	0	0	61	0.96
228808--228937	57	2.3	56	79	7	131	50	3	0	46	1.22
229241--229279	20	2.0	20	84	0	51	56	0	0	43	0.99
231250--231290	17	2.3	19	87	12	68	65	2	0	31	1.05
231588--231665	37	2.1	37	81	9	88	52	0	1	46	1.08
238255--238377	15	8.3	16	77	13	122	40	0	0	59	0.97
238273--238352	22	3.7	23	73	14	71	41	0	0	58	0.98
238260--238383	16	8.5	15	72	17	59	40	0	0	58	1.03
238395--238447	27	2.0	27	82	10	65	52	1	0	45	1.11
238536--238579	13	3.3	13	83	3	52	31	2	2	63	1.19
238898--238959	20	2.9	21	72	15	56	43	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238889--238983	43	2.1	48	80	11	110	45	0	1	53	1.07
238927--238994	23	2.9	23	80	14	68	50	0	0	50	1.00
238948--239001	22	2.5	21	80	19	58	50	1	0	48	1.11
240570--240607	20	1.9	20	89	10	60	63	0	0	36	0.95
241639--241685	24	2.0	24	95	0	85	23	29	29	17	1.97
246703--246751	18	2.7	18	81	18	57	36	0	0	63	0.95
246707--246751	17	2.7	18	83	13	60	37	0	0	62	0.96
247973--249363	274	5.0	273	78	9	1211	41	9	12	37	1.74
248190--249293	577	1.9	577	84	3	1470	40	9	12	37	1.76
258400--258449	18	2.9	18	74	20	61	14	2	0	84	0.72

Tables:   1   2   3   4   5   6   7   8