genome.fa.s262.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold262
Parameters: 2 7 7 80 10 50 1000
Length:  1141274

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 957 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405620--405998	188	2.0	188	94	0	659	37	9	16	36	1.81
406614--406889	140	2.0	139	95	0	498	37	10	14	36	1.82
408035--408066	15	2.1	16	94	5	57	50	6	0	43	1.27
410200--410241	4	10.5	4	94	0	75	23	2	26	47	1.64
410469--410509	21	2.0	21	85	0	55	51	2	0	46	1.14
411445--411676	50	4.6	50	88	2	331	27	19	21	31	1.97
411445--411676	99	2.3	99	89	1	347	27	19	21	31	1.97
416087--416316	50	4.6	50	93	0	379	27	20	21	30	1.98
418039--418100	32	1.9	32	96	0	115	33	19	16	30	1.94
418743--418826	25	3.3	26	79	17	88	52	16	3	27	1.60
418761--418826	23	2.8	22	73	22	62	51	15	3	30	1.58
418761--418855	48	2.0	49	81	10	115	50	12	4	32	1.59
419359--419392	15	2.2	16	89	5	52	20	8	14	55	1.65
419664--419712	5	9.8	5	79	16	57	57	0	2	40	1.10
419663--419712	9	5.1	9	81	13	55	56	0	2	42	1.11
419663--419712	21	2.5	19	81	12	64	56	0	2	42	1.11
421167--421222	14	4.1	14	73	13	53	55	1	1	41	1.21
426599--426644	15	3.1	15	84	6	58	47	2	0	50	1.13
426684--426732	18	2.6	18	81	12	55	44	4	0	51	1.20
426949--426973	12	2.1	12	100	0	50	0	8	0	92	0.40
427159--427224	29	2.2	30	81	7	82	43	6	1	48	1.36
427179--427237	30	2.0	30	82	0	73	40	10	3	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430388--430416	12	2.4	12	100	0	58	51	13	0	34	1.42
430390--430426	16	2.3	16	90	0	56	51	13	0	35	1.41
430408--430495	44	2.0	44	97	0	167	44	13	3	38	1.61
430898--430946	22	2.3	23	79	13	68	61	0	2	36	1.08
431175--431217	20	2.0	21	82	8	52	69	0	0	30	0.88
431642--431678	12	3.2	12	88	7	58	54	0	0	45	1.00
431845--431915	13	5.9	13	68	25	50	47	0	0	52	1.00
431832--431922	15	6.3	15	75	15	59	46	0	0	53	1.00
431875--431924	13	3.1	16	75	24	52	46	0	0	54	1.00
432166--432206	14	2.9	14	85	3	55	46	0	2	51	1.14
432166--432200	15	2.4	15	90	4	54	48	0	2	48	1.16
432860--432915	3	18.7	3	89	7	87	69	0	0	30	0.89
433150--433299	11	13.5	11	67	17	51	37	0	0	62	1.01
433164--433270	20	5.4	19	72	18	76	40	0	0	59	0.97
433158--433286	27	4.4	29	77	14	97	38	0	0	61	0.96
433180--433301	27	4.3	28	76	13	97	39	0	0	59	1.03
433436--433473	19	2.0	20	84	5	51	57	0	0	42	0.98
433434--433492	25	2.4	24	86	11	75	59	0	0	40	0.97
434366--434399	14	2.4	14	85	0	50	0	17	0	82	0.67
435817--435856	18	2.2	18	90	0	62	35	7	27	30	1.84
438607--438632	2	13.0	2	100	0	52	0	50	0	50	1.00
438632--438658	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438909--438978	22	3.1	23	86	10	92	61	0	0	38	0.96
441939--441976	14	2.6	15	87	8	60	60	0	0	39	0.97
442331--442355	13	1.9	13	100	0	50	40	4	0	56	1.18
444777--444860	26	3.3	25	72	23	68	50	0	0	50	1.00
445012--445067	21	2.8	20	76	17	62	42	0	0	57	0.99
445585--445626	21	2.0	21	85	4	57	80	0	14	4	0.86
446429--446458	15	2.0	15	100	0	60	46	0	0	53	1.00
452960--453041	43	1.9	43	94	0	146	31	10	15	41	1.82
453975--454071	21	4.8	22	72	20	86	62	0	0	37	0.95
453991--454074	15	5.6	15	72	17	68	64	0	0	35	0.94
453991--454074	38	2.2	37	85	6	107	64	0	0	35	0.94
453985--454071	5	17.4	5	68	13	54	63	0	0	36	0.95
454243--454365	30	4.4	28	71	22	107	52	0	0	45	1.12
454260--454377	53	2.3	48	77	18	132	56	0	0	41	1.11
454279--454395	53	2.1	55	89	4	175	53	0	0	44	1.12
454298--454383	13	6.2	15	70	24	55	58	1	1	39	1.13
455119--455176	27	2.1	27	81	6	64	48	3	0	48	1.18
455153--455194	20	2.1	20	91	8	68	52	0	0	47	1.00
463759--463810	26	1.9	26	84	7	68	53	1	0	44	1.11
464025--464165	21	6.2	23	68	18	73	60	0	0	38	1.02
464028--464085	19	2.9	20	83	14	75	65	0	1	32	1.03
464094--464155	27	2.2	28	86	8	83	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464317--464435	27	4.3	28	72	15	97	53	0	0	46	1.00
464368--464446	13	5.9	14	75	21	71	59	0	0	40	0.97
464362--464465	53	1.9	55	92	3	176	56	0	0	43	0.99
464329--464437	26	4.0	27	73	18	102	56	0	0	43	0.99
464395--464453	13	3.8	15	72	20	50	57	0	0	42	0.98
464491--464520	15	2.0	15	93	0	51	53	3	0	43	1.17
465674--465715	20	2.1	20	91	8	68	52	0	0	47	1.00
467201--467229	15	1.9	15	100	0	58	68	0	17	13	1.20
468341--468398	16	3.7	16	78	13	50	44	0	0	55	0.99
468782--468814	16	2.0	17	88	5	50	60	0	0	39	0.97
469902--470051	64	2.3	64	79	15	159	30	8	10	51	1.65
470879--470944	30	2.2	29	89	7	98	56	1	1	40	1.18
471097--471154	24	2.6	23	83	8	66	55	0	0	44	0.99
471116--471165	24	2.1	24	88	7	75	50	0	0	50	1.00
471116--471163	23	2.0	24	88	4	71	50	0	0	50	1.00
471722--471756	17	2.1	16	94	5	61	34	0	0	65	0.93
472036--472086	3	17.0	3	100	0	102	66	0	0	33	0.92
472235--472275	3	13.7	3	100	0	82	31	0	0	68	0.90
474334--474378	22	2.1	21	83	4	54	60	8	6	24	1.51
475526--475570	3	15.0	3	100	0	90	33	0	0	66	0.92
475825--475886	27	2.6	23	70	20	54	51	0	3	45	1.17
477859--477891	16	2.1	16	100	0	66	33	18	6	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479764--479792	14	2.1	14	100	0	58	44	0	0	55	0.99
482760--482850	1	91.0	1	77	0	74	0	7	5	86	0.69
482759--482849	32	2.8	33	93	6	159	0	8	5	85	0.73
492622--492668	5	9.6	5	86	9	62	0	12	0	87	0.55
492620--492662	11	3.9	11	84	9	61	0	11	0	88	0.52
494133--494180	23	2.0	23	88	8	69	66	0	4	29	1.10
494521--494613	41	2.2	41	96	1	168	35	18	2	44	1.62
495094--495153	29	2.1	27	81	6	66	30	1	3	65	1.19
495214--495252	20	2.0	20	85	10	53	61	0	2	35	1.10
495226--495285	21	2.7	23	74	10	61	63	1	3	31	1.20
495203--495290	21	3.9	21	68	14	50	57	1	3	37	1.23
495574--495655	8	9.8	8	71	21	53	54	0	0	45	0.99
495578--495666	33	2.6	33	81	13	92	53	0	0	46	1.00
495584--495724	33	5.0	27	70	20	76	51	1	2	43	1.25
495641--495701	15	4.1	15	76	16	65	52	1	4	40	1.33
495772--495898	5	25.8	5	63	15	50	42	0	0	56	1.04
495772--495906	18	7.3	18	65	23	59	42	0	0	57	1.04
495816--495870	14	3.4	16	76	20	60	41	0	0	58	0.98
495772--495859	27	3.2	28	79	10	76	40	1	0	57	1.06
495813--495897	32	2.5	33	79	11	93	44	0	0	55	0.99
495772--495906	16	8.1	16	67	22	73	42	0	0	57	1.04
496365--496445	40	2.0	40	100	0	162	37	7	4	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497503--497543	21	2.0	21	95	0	73	31	2	7	58	1.38
499103--499140	2	19.0	2	100	0	76	50	0	0	50	1.00
499455--499498	11	4.1	11	85	5	63	20	0	2	77	0.88
499501--499639	5	28.2	5	67	18	69	54	0	0	43	1.10
499498--499544	12	4.1	12	86	10	62	59	0	0	40	0.97
499495--499639	49	3.0	47	69	16	116	54	0	0	44	1.10
499495--499628	16	8.7	16	70	23	83	54	0	0	44	1.10
501933--501969	16	2.3	16	90	0	56	48	0	5	45	1.25
501985--502044	21	2.7	23	75	17	63	48	0	0	51	1.00
503822--503856	12	2.9	12	91	0	52	57	0	5	37	1.23

Tables:   1   2   3   4   5   6   7   8