genome.fa.s262.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold262
Parameters: 2 7 7 80 10 50 1000
Length:  1141274

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 957 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776561--776624	31	2.1	30	85	2	83	43	1	1	53	1.19
776595--776645	18	2.7	19	77	16	54	49	1	0	49	1.12
776780--776813	17	2.0	17	88	0	50	41	0	0	58	0.98
778747--778830	35	2.8	27	72	26	78	50	1	0	48	1.08
778761--778837	35	2.2	36	92	2	138	53	1	0	45	1.08
779268--779301	7	4.6	7	89	10	50	14	0	2	82	0.79
780332--780383	23	2.3	23	86	6	70	48	0	0	51	1.00
780743--780785	19	2.4	17	82	17	59	30	2	0	67	1.03
780743--780872	10	13.1	10	73	20	57	38	2	0	59	1.10
780754--780820	22	3.0	22	79	12	73	31	2	0	65	1.07
780756--780813	27	2.1	29	87	6	84	31	3	0	65	1.09
780771--780827	27	2.1	27	83	6	71	33	1	0	64	1.04
780829--780873	2	22.5	2	100	0	90	51	0	0	48	1.00
781193--781237	17	2.5	17	82	7	54	44	8	0	46	1.34
781437--781462	13	2.0	13	100	0	52	84	0	0	15	0.62
781778--781812	17	2.1	16	89	5	52	54	0	0	45	0.99
781871--781905	13	2.6	13	86	4	52	60	0	0	40	0.97
781863--781902	20	2.0	20	85	9	55	60	0	2	37	1.11
792574--792617	21	2.2	20	83	4	52	65	0	0	34	0.93
795003--795031	2	14.5	2	100	0	58	0	0	48	51	1.00
796091--796126	2	17.5	2	88	5	54	50	2	0	47	1.15
800641--800677	18	2.0	18	89	5	56	29	0	2	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800744--800783	21	2.0	21	85	5	55	67	7	17	7	1.38
801489--801519	12	2.7	12	95	5	55	48	0	0	51	1.00
808812--808919	36	3.1	36	79	2	94	47	7	8	37	1.62
810236--810282	24	2.0	24	83	8	60	48	4	14	31	1.63
810355--810433	27	2.9	27	100	0	158	51	11	13	22	1.73
810829--810870	21	2.2	18	87	12	57	40	0	2	57	1.12
810889--810920	3	10.7	3	100	0	64	68	0	0	31	0.90
811030--811085	23	2.4	24	85	8	71	35	3	0	60	1.14
812385--812523	15	8.6	16	64	19	58	56	1	0	41	1.08
813546--813592	2	23.5	2	87	8	60	53	0	2	44	1.12
813547--813576	15	2.0	15	100	0	60	53	0	0	46	1.00
813546--813592	17	2.8	17	90	6	69	53	0	2	44	1.12
813546--813592	19	2.5	19	89	6	69	53	0	2	44	1.12
814904--814993	6	15.0	6	68	25	57	33	3	2	61	1.25
814917--814981	28	2.5	25	79	20	71	35	3	0	61	1.12
815172--815228	27	2.1	27	100	0	114	40	7	7	45	1.58
819032--819077	24	1.9	24	86	0	65	50	6	0	43	1.28
819773--819845	24	3.0	24	84	7	76	42	0	0	57	0.98
820505--820550	2	23.0	2	95	0	83	47	0	2	50	1.13
827182--827229	19	2.4	19	86	6	60	52	2	6	39	1.39
827749--827819	19	3.7	19	75	14	65	50	0	2	46	1.16
828344--828389	15	3.0	15	83	3	56	43	2	2	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828598--828630	6	5.7	6	89	7	50	39	0	0	60	0.97
828710--828783	16	4.5	16	72	8	60	66	1	2	29	1.14
829390--829495	38	2.8	38	95	1	185	31	19	18	30	1.96
829971--830002	2	16.0	2	100	0	64	50	0	0	50	1.00
830493--830661	50	3.4	50	80	6	200	31	16	17	34	1.93
830642--830679	18	2.1	18	100	0	76	23	5	34	36	1.78
830600--830729	68	1.9	68	91	0	215	29	12	22	36	1.90
835059--835264	50	4.1	50	85	2	252	31	19	16	33	1.94
837049--837079	2	15.5	2	100	0	62	48	0	0	51	1.00
838433--838460	14	2.0	14	100	0	56	78	0	14	7	0.95
838497--838526	15	2.0	15	93	0	51	30	0	0	70	0.88
838566--838616	25	2.0	26	85	7	70	47	0	0	52	1.00
838577--838651	24	3.1	24	76	14	64	34	1	2	61	1.18
840710--840754	22	2.0	22	87	8	65	53	0	0	46	1.00
841919--841969	25	2.0	25	100	0	102	60	7	7	23	1.50
842610--842640	2	15.5	2	100	0	62	48	0	0	51	1.00
844492--844516	3	8.3	3	100	0	50	68	0	32	0	0.90
846250--846283	2	17.0	2	100	0	68	50	0	0	50	1.00
847485--847523	20	2.0	19	90	5	60	33	0	0	66	0.92
855101--855139	20	1.9	21	84	5	53	33	0	0	66	0.92
862297--862323	2	13.5	2	100	0	54	48	0	0	51	1.00
865497--865526	2	15.0	2	92	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865746--865771	2	13.0	2	100	0	52	50	0	0	50	1.00
866370--866424	28	1.9	29	85	10	78	43	3	0	52	1.18
866408--866500	30	3.1	29	71	17	82	40	5	0	53	1.24
868692--868743	18	2.9	18	85	0	68	59	9	1	28	1.40
868692--868729	6	6.3	6	96	0	67	55	13	0	31	1.38
874262--874326	23	2.8	23	75	15	62	44	1	3	50	1.26
874445--874518	38	2.0	36	82	17	91	51	1	0	47	1.09
876157--876193	10	3.9	10	82	10	51	64	5	0	29	1.15
876206--876255	27	1.9	27	84	15	70	56	0	0	44	0.99
876206--876294	35	2.6	35	76	15	96	57	1	0	41	1.06
876208--876289	42	2.0	39	86	6	110	58	1	0	40	1.06
886239--886273	3	11.7	3	93	0	61	28	0	0	71	0.86
891047--891095	3	16.3	3	100	0	98	65	0	0	34	0.93
892421--892457	15	2.4	16	82	13	51	51	0	0	48	1.00
895362--895413	26	2.0	26	100	0	104	34	7	30	26	1.85
898716--898770	27	2.1	26	86	3	74	45	1	0	52	1.11
903606--903635	2	15.0	2	100	0	60	50	0	0	50	1.00
903860--903906	2	24.5	2	80	8	53	42	0	4	53	1.20
904911--904965	24	2.2	24	87	6	74	65	0	0	34	0.93
904957--905030	19	4.2	18	74	20	68	39	0	0	60	0.97
904962--905031	6	11.8	6	72	22	51	37	0	0	62	0.95
904977--905030	18	3.0	18	79	15	67	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905634--905688	24	2.2	25	83	3	67	32	0	3	63	1.12
905764--905794	16	1.9	16	93	0	53	35	0	0	64	0.94
905767--905844	27	2.9	26	81	11	79	37	0	1	61	1.04
906097--906126	2	15.0	2	100	0	60	50	0	0	50	1.00
914225--914272	15	3.0	16	81	9	53	54	0	0	45	0.99
914257--914308	28	1.9	26	88	7	77	44	0	0	55	0.99
914201--914326	17	7.2	18	74	14	59	46	0	0	52	1.11
917634--917668	2	17.5	2	100	0	70	51	0	48	0	1.00
918745--918782	2	20.0	2	84	10	53	47	2	0	50	1.15
919829--919876	16	2.7	17	78	15	53	50	0	0	50	1.00
920158--920188	2	15.5	2	100	0	62	48	0	0	51	1.00
923093--923149	28	2.0	28	93	0	96	33	12	19	35	1.89
927287--927329	18	2.3	19	80	4	52	65	0	4	30	1.13
933569--933595	2	13.5	2	100	0	54	51	0	0	48	1.00
936107--936183	17	4.4	17	71	20	61	53	0	0	46	1.00
936100--936183	28	3.1	27	77	11	75	53	0	0	46	1.00
936113--936192	27	3.0	27	78	8	83	52	0	0	47	1.00
940023--940077	27	2.0	27	85	7	74	47	0	0	52	1.00
940059--940106	20	2.4	21	82	10	64	56	0	0	43	0.99
941905--941939	2	17.5	2	87	0	52	45	2	2	48	1.32
950373--950434	22	2.9	22	78	4	65	48	0	0	51	1.00
951098--951145	16	3.3	15	80	19	50	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955059--955084	2	13.0	2	100	0	52	50	0	0	50	1.00
956091--956146	16	3.3	17	78	9	53	57	1	0	41	1.09
957375--957409	3	11.7	3	100	0	70	34	0	0	65	0.93
961888--961949	29	2.1	29	93	0	106	56	8	11	24	1.61
962145--962201	2	28.0	2	82	3	69	49	8	0	42	1.34
962359--962383	2	12.5	2	100	0	50	52	0	0	48	1.00
964522--964552	2	15.5	2	100	0	62	0	48	0	51	1.00
967344--967382	18	2.3	17	86	8	53	20	5	17	56	1.60
970229--970294	24	2.9	24	72	25	70	36	1	0	62	1.05
970307--970365	25	2.5	23	73	10	57	52	1	0	45	1.10

Tables:   1   2   3   4   5   6   7   8