genome.fa.s262.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold262
Parameters: 2 7 7 80 10 50 1000
Length:  1141274

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 957 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650088--650155	6	11.0	6	76	17	68	48	0	1	50	1.10
650062--650191	37	3.5	36	80	11	131	44	0	3	50	1.25
650079--650132	12	4.4	12	79	11	56	50	0	0	50	1.00
650210--650236	14	1.9	14	100	0	54	40	0	0	59	0.98
656989--657246	58	4.4	58	84	0	311	35	30	17	17	1.93
656988--657240	116	2.2	116	86	0	344	35	30	16	16	1.92
656989--657276	58	5.0	58	82	3	251	36	29	16	17	1.92
664467--664517	5	10.0	5	78	18	52	35	0	1	62	1.06
664476--664517	14	2.9	14	92	3	66	35	0	0	64	0.94
664518--664542	8	3.1	8	100	0	50	88	0	0	12	0.53
664946--664987	14	2.9	15	82	13	52	71	2	0	26	0.98
665759--665789	14	2.2	14	94	0	53	67	6	0	25	1.14
667168--667221	27	2.0	27	85	7	74	14	9	16	59	1.60
675261--675299	3	13.0	3	100	0	78	66	0	0	33	0.92
675654--675693	17	2.3	17	86	4	53	45	10	7	37	1.66
678366--678410	22	2.0	23	86	4	65	42	0	2	55	1.12
680108--680155	21	2.4	20	76	10	53	35	0	4	60	1.16
680113--680156	21	2.1	21	86	0	61	29	0	4	65	1.12
680576--680609	16	2.2	16	89	5	52	52	5	2	38	1.41
684364--684404	20	2.0	20	100	0	82	31	39	9	19	1.84
685528--685571	18	2.4	18	88	7	63	70	0	2	27	0.99
690482--690524	21	2.0	20	91	8	68	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690488--690533	21	2.2	21	88	7	67	52	0	0	47	1.00
692704--692751	24	2.0	24	95	0	87	35	8	27	29	1.86
692712--692761	24	2.2	23	86	10	68	34	10	30	26	1.89
693854--694265	179	2.4	170	80	3	428	33	22	11	31	1.91
696203--696237	18	1.9	18	88	11	54	48	0	0	51	1.00
699226--699255	11	2.8	11	95	5	53	93	0	6	0	0.35
699497--699594	27	3.4	29	77	18	89	44	1	0	54	1.07
699520--699577	18	3.1	19	82	9	75	43	0	0	56	0.99
699501--699578	20	3.9	19	80	13	86	43	1	0	55	1.08
699951--700002	14	3.6	14	76	19	54	42	0	0	57	0.98
699939--700012	29	2.6	30	80	18	79	48	0	0	51	1.00
700187--700224	17	2.2	18	85	4	51	26	0	0	73	0.83
700361--700395	2	17.5	2	93	0	61	51	2	0	45	1.16
700694--700731	20	1.9	20	84	10	51	47	0	2	50	1.15
700782--700848	33	1.9	36	85	8	95	22	2	4	70	1.19
701115--701152	14	2.8	14	88	4	60	57	0	0	42	0.98
701345--701373	2	14.5	2	100	0	58	51	0	0	48	1.00
703691--703732	20	2.2	18	87	8	57	59	0	0	40	0.97
703993--704063	24	2.9	23	78	14	63	47	0	0	52	1.00
704031--704064	14	2.4	14	90	9	52	47	0	0	52	1.00
705555--705584	15	2.0	15	93	0	51	30	20	10	40	1.85
707155--707192	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707550--707615	22	3.0	22	100	0	132	27	13	13	45	1.81
707551--707626	22	3.5	21	94	5	118	27	11	14	46	1.80
708836--708885	3	15.7	3	91	8	57	70	0	0	30	0.88
708836--708885	14	3.6	14	79	15	59	70	0	0	30	0.88
708836--708884	17	2.7	18	84	15	66	71	0	0	28	0.86
709630--709687	19	3.1	19	73	14	57	70	1	1	25	1.06
710015--710039	6	4.2	6	100	0	50	0	32	16	52	1.44
711472--711517	12	3.7	13	80	5	51	32	0	0	67	0.91
712125--712178	13	4.2	13	80	7	56	44	0	0	55	0.99
712161--712205	16	2.8	16	75	0	54	60	0	0	40	0.97
712191--712233	2	21.0	2	85	4	59	44	0	4	51	1.22
712634--712677	14	3.1	14	78	15	54	54	0	0	45	0.99
715262--715297	2	18.0	2	94	0	63	47	0	2	50	1.15
715383--715415	2	16.5	2	87	12	50	51	3	0	45	1.16
715820--715852	13	2.4	14	90	5	50	69	3	0	27	1.03
716080--716109	14	2.1	14	93	0	51	43	0	0	56	0.99
718449--718480	13	2.5	13	95	5	57	59	0	0	40	0.97
718462--718508	24	2.0	23	83	4	58	59	0	0	40	0.97
718711--718748	2	19.0	2	100	0	76	50	0	0	50	1.00
719417--719448	1	32.0	1	93	0	55	0	96	0	3	0.20
726733--726767	3	11.7	3	100	0	70	65	0	0	34	0.93
726911--726987	32	2.4	32	86	4	102	45	0	1	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726978--727020	21	2.0	21	86	8	61	27	0	0	72	0.85
726983--727027	16	2.9	16	90	9	67	31	0	0	68	0.89
727271--727309	3	13.0	3	94	0	69	64	0	2	33	1.08
728515--728676	56	2.9	55	79	11	150	45	0	1	51	1.16
728725--728771	17	2.5	19	80	13	53	59	0	0	40	0.97
728814--728851	18	2.1	19	85	5	51	42	0	0	57	0.98
730162--730227	30	2.2	30	89	10	100	42	3	0	54	1.15
730465--730508	21	2.1	21	83	8	54	47	0	2	50	1.13
730759--730813	7	7.4	7	75	24	51	43	0	0	56	0.99
730759--730814	14	3.8	14	84	15	69	42	0	0	57	0.99
731353--731396	21	2.0	21	86	8	61	40	0	0	59	0.98
731454--731507	22	2.4	21	73	11	54	53	3	1	40	1.29
731454--731511	23	2.6	22	72	8	55	55	3	1	39	1.27
731504--731551	16	3.2	15	80	11	62	54	0	0	45	0.99
731475--731553	15	5.1	15	77	9	70	56	0	1	41	1.07
732069--732178	48	2.4	45	78	11	114	42	0	3	53	1.18
732452--732506	15	3.5	14	77	22	56	52	0	3	43	1.18
732455--732500	18	2.4	19	82	10	58	56	0	4	39	1.19
739731--739757	2	13.5	2	100	0	54	0	51	0	48	1.00
740681--740712	17	1.9	17	93	6	57	81	6	6	6	0.99
740669--740718	17	2.9	16	82	8	55	78	6	4	12	1.08
742511--742546	14	2.4	15	90	9	56	61	5	0	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746958--746997	2	20.0	2	100	0	80	50	0	0	50	1.00
750438--750485	25	1.9	25	83	8	62	52	0	0	47	1.00
752323--752367	18	2.3	20	88	11	67	60	0	0	40	0.97
752465--752512	23	2.1	22	84	3	60	39	0	0	60	0.97
752610--752643	6	5.7	6	96	0	50	41	8	0	50	1.34
753138--753172	7	5.3	7	86	13	56	60	0	0	40	0.97
753138--753177	13	3.0	13	96	3	71	60	0	0	40	0.97
755011--755054	21	2.0	21	86	4	61	45	0	0	54	0.99
755879--755932	28	1.9	28	96	0	99	51	0	5	42	1.25
755944--755978	16	2.2	17	90	10	56	34	0	0	65	0.93
756476--756515	21	1.9	21	94	0	71	67	2	7	22	1.28
759168--759208	2	20.5	2	94	0	73	48	0	2	48	1.14
759259--759286	2	14.0	2	100	0	56	50	0	0	50	1.00
759996--760028	2	16.5	2	100	0	66	51	0	0	48	1.00
760235--760280	3	15.3	3	100	0	92	67	0	0	32	0.91
760433--760480	23	2.2	21	81	7	51	43	0	2	54	1.12
760467--760499	16	2.0	17	94	5	59	63	0	0	36	0.95
760472--760519	21	2.2	21	85	10	62	54	0	0	45	0.99
760769--760811	2	21.5	2	100	0	86	48	0	0	51	1.00
761091--761132	22	1.9	22	85	9	59	61	2	0	35	1.09
767981--768060	35	2.2	35	78	14	83	41	0	0	58	0.98
767999--768044	17	2.7	18	83	10	60	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768931--768969	2	20.0	2	84	5	53	48	5	0	46	1.24
769563--769608	23	2.0	23	87	8	67	54	2	10	32	1.47
769856--769917	31	2.1	30	82	11	74	46	3	1	48	1.28
773443--773472	15	2.0	15	100	0	60	20	13	26	40	1.89
773841--773873	2	16.5	2	100	0	66	48	0	0	51	1.00
775283--775307	2	12.5	2	100	0	50	48	0	0	52	1.00
775879--775932	12	4.6	12	79	9	58	48	0	0	51	1.00
775879--775933	24	2.2	24	84	9	67	49	0	0	50	1.00
776229--776256	13	2.2	13	100	0	56	46	10	7	35	1.66
776297--776323	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8